BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0024.0064.p (497 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310093|ref|YP_003774185.1| transmembrane protein [Herbaspi... 938 0.0 gi|300313314|ref|YP_003777406.1| transmembrane protein [Herbaspi... 874 0.0 >gi|300310093|ref|YP_003774185.1| transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 1291 Score = 938 bits (2424), Expect = 0.0, Method: Compositional matrix adjust. Identities = 450/494 (91%), Positives = 471/494 (95%) Query: 1 MQRLWHILSDTRVLILLGFAALAAFLFIGADQLEVALIWAAALLGLLLLVWLGFWLYKRW 60 MQRLWH LSDTR L+++GFAALAAFLFIGA LE+AL WAA +L + LL WLG+WLY+RW Sbjct: 1 MQRLWHFLSDTRTLVIIGFAALAAFLFIGASTLELALTWAAVILAIALLCWLGYWLYRRW 60 Query: 61 KVRRAAGKLENVLEQQASQAAPASSDGARRDDVNALRQRMLDAINTIKTSKLGQKSGAAA 120 KVRRAAGKL VLEQQA+Q+ ASSDGA+R++V ALR RML+AINTIKTSKLGQKSG+AA Sbjct: 61 KVRRAAGKLGEVLEQQATQSVAASSDGAQREEVAALRTRMLEAINTIKTSKLGQKSGSAA 120 Query: 121 LYELPWYMVIGNPAAGKSTAIANSGLQFPFADKGGKIVHGVGGTRNCDWFFTTDGILLDT 180 LYELPWYMVIGNPAAGKSTAIANSGLQFPFADKGGKIVHGVGGTRNCDWFFTTDGILLDT Sbjct: 121 LYELPWYMVIGNPAAGKSTAIANSGLQFPFADKGGKIVHGVGGTRNCDWFFTTDGILLDT 180 Query: 181 AGRYSVYEEDRNEWFSFLGLLKRYRKQAPINGIIIAVSIAELTGNRPEFAINLAKNLRQR 240 AGRYSVYEEDRNEWFSFLGLLKRYRKQAPINGIIIAVSIAELTGNRPEFAINLAKNLRQR Sbjct: 181 AGRYSVYEEDRNEWFSFLGLLKRYRKQAPINGIIIAVSIAELTGNRPEFAINLAKNLRQR 240 Query: 241 VQELTEKLEVFAPVYVVFTKADLITGFNEFFLDTERGERDRVWGATLAYDRKRSGQEVSS 300 VQELTEKLEVFAPVYVVFTKADLITGFNEFFLDTER ERDRVWGATLAYDRKRSGQEV S Sbjct: 241 VQELTEKLEVFAPVYVVFTKADLITGFNEFFLDTERSERDRVWGATLAYDRKRSGQEVVS 300 Query: 301 FFDERFDELYAGLKEMSLANMSVKRGENLAPGVLTFPLEFSSIKGVLRSFVTTLFEENPF 360 FFDERFDELYAGLKEMSLA+MSVKRGEN+APGVLTFPLEFSSIKGVLRSFV TLFEENPF Sbjct: 301 FFDERFDELYAGLKEMSLASMSVKRGENMAPGVLTFPLEFSSIKGVLRSFVATLFEENPF 360 Query: 361 QFKPVFRGFYFTSALQEGATVSASSQRIADRFGLTLEHKPQREIFSQHGFFLHNLFKQVI 420 QFKPVFRGFYFTSA+QEGATVSASSQRIADRFGL LEHKPQREIFSQHGFFLHNLFKQVI Sbjct: 361 QFKPVFRGFYFTSAVQEGATVSASSQRIADRFGLALEHKPQREIFSQHGFFLHNLFKQVI 420 Query: 421 FADKQLVAQYTSRNKIRMRYVTFFAAVTVLGALLGGWSWSYMGNRQLVANVQADMDKAVK 480 FADKQLVAQYTSR KIRMRY TFFAA+ +LG LLGGWSWSYMGNRQL+ANVQADMDKAVK Sbjct: 421 FADKQLVAQYTSRTKIRMRYATFFAAIAILGVLLGGWSWSYMGNRQLLANVQADMDKAVK 480 Query: 481 LQEKRLDLQSRFEA 494 LQEKRLDLQSRFEA Sbjct: 481 LQEKRLDLQSRFEA 494 >gi|300313314|ref|YP_003777406.1| transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 1266 Score = 874 bits (2257), Expect = 0.0, Method: Compositional matrix adjust. Identities = 441/494 (89%), Positives = 461/494 (93%) Query: 1 MQRLWHILSDTRVLILLGFAALAAFLFIGADQLEVALIWAAALLGLLLLVWLGFWLYKRW 60 MQRLW ILSDTRVL LLGF ALAA LFIGA+QLE+A IW A L LLL WL Y+RW Sbjct: 1 MQRLWKILSDTRVLTLLGFMALAAVLFIGAEQLELAPIWPAVLFCALLLAWLALRRYQRW 60 Query: 61 KVRRAAGKLENVLEQQASQAAPASSDGARRDDVNALRQRMLDAINTIKTSKLGQKSGAAA 120 K +RAA KLENVLEQQA+Q P S+ AR DDV ALRQRML+AINTIKTSKLGQKSGAAA Sbjct: 61 KAQRAATKLENVLEQQAAQPLPVDSEAARHDDVAALRQRMLEAINTIKTSKLGQKSGAAA 120 Query: 121 LYELPWYMVIGNPAAGKSTAIANSGLQFPFADKGGKIVHGVGGTRNCDWFFTTDGILLDT 180 LYELPWYMVIGNPAAGKSTAIANSGLQFPFADKGGKIVHGVGGTRNCDWFFTTDGILLDT Sbjct: 121 LYELPWYMVIGNPAAGKSTAIANSGLQFPFADKGGKIVHGVGGTRNCDWFFTTDGILLDT 180 Query: 181 AGRYSVYEEDRNEWFSFLGLLKRYRKQAPINGIIIAVSIAELTGNRPEFAINLAKNLRQR 240 AGRYSVYEEDR EWFSFLGLLKRYRKQAPINGIIIAVSIAELTGNRPEFAINLAKNLRQR Sbjct: 181 AGRYSVYEEDRREWFSFLGLLKRYRKQAPINGIIIAVSIAELTGNRPEFAINLAKNLRQR 240 Query: 241 VQELTEKLEVFAPVYVVFTKADLITGFNEFFLDTERGERDRVWGATLAYDRKRSGQEVSS 300 VQELTEKLEVFAPVYVVFTK DLITGFNEFFLD+ERGERDRVWGATLAYDRK SGQEVS+ Sbjct: 241 VQELTEKLEVFAPVYVVFTKTDLITGFNEFFLDSERGERDRVWGATLAYDRKHSGQEVSN 300 Query: 301 FFDERFDELYAGLKEMSLANMSVKRGENLAPGVLTFPLEFSSIKGVLRSFVTTLFEENPF 360 FFDERFDELYAGLKEMSLANM+VKRGENLAPGVLTFPLEFS+ KGVLRSFVTTLFEENPF Sbjct: 301 FFDERFDELYAGLKEMSLANMAVKRGENLAPGVLTFPLEFSAFKGVLRSFVTTLFEENPF 360 Query: 361 QFKPVFRGFYFTSALQEGATVSASSQRIADRFGLTLEHKPQREIFSQHGFFLHNLFKQVI 420 QFKPVFRGFYFTSALQEGAT+ AS+QRIADRFGLTLE +PQRE+ S+ GFFLHNLFKQVI Sbjct: 361 QFKPVFRGFYFTSALQEGATLGASAQRIADRFGLTLEDQPQREVLSKQGFFLHNLFKQVI 420 Query: 421 FADKQLVAQYTSRNKIRMRYVTFFAAVTVLGALLGGWSWSYMGNRQLVANVQADMDKAVK 480 FADKQLVAQYTSRNKIRMRY+TFFAA+ +LGALLGGWSWSYMGNRQLVANVQADMDKA+K Sbjct: 421 FADKQLVAQYTSRNKIRMRYLTFFAALAMLGALLGGWSWSYMGNRQLVANVQADMDKAIK 480 Query: 481 LQEKRLDLQSRFEA 494 LQEKRLDLQSRFEA Sbjct: 481 LQEKRLDLQSRFEA 494 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.323 0.137 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,306,526 Number of extensions: 52797 Number of successful extensions: 134 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 134 Number of HSP's successfully gapped: 2 Length of query: 497 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 408 Effective length of database: 1,198,455 Effective search space: 488969640 Effective search space used: 488969640 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 132 (55.5 bits)