BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0024.0063.p (701 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310093|ref|YP_003774185.1| transmembrane protein [Herbaspi... 1312 0.0 gi|300313314|ref|YP_003777406.1| transmembrane protein [Herbaspi... 1276 0.0 >gi|300310093|ref|YP_003774185.1| transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 1291 Score = 1312 bits (3395), Expect = 0.0, Method: Compositional matrix adjust. Identities = 636/698 (91%), Positives = 672/698 (96%), Gaps = 1/698 (0%) Query: 1 VGLGLYQGDLLERKLREEYFAGIKEIMLKPVSSNIETYLMEVNANSGKLEPMAKPPQAGG 60 VG+GLYQGDLLERKLREEYF+GIKEIMLKPV+SNIE+YLMEVNAN+ +LEPM++PPQ+GG Sbjct: 516 VGMGLYQGDLLERKLREEYFSGIKEIMLKPVASNIESYLMEVNANAARLEPMSRPPQSGG 575 Query: 61 VTTVADNAAQAANALRTYKDSSATSVEDAYNALKTYLMLSDKSRAESSHLSDQITRFWRG 120 +T VADN AQAA+ALRTYKDSSATSVEDAYNALKTYLML+DKSRAESSHL+DQITRFWRG Sbjct: 576 ITPVADNGAQAASALRTYKDSSATSVEDAYNALKTYLMLADKSRAESSHLNDQITRFWRG 635 Query: 121 WLETNRGTMPREQMIRSAERLISFSLEQINDPSWPTVESKLTLVDQTRENLRRVVRGMPA 180 WLETNRGTMPREQMIRSAERLISFSLEQINDPSWPT+++KLTLVDQ RENLRRVVRGMPA Sbjct: 636 WLETNRGTMPREQMIRSAERLISFSLEQINDPSWPTIDNKLTLVDQARENLRRVVRGMPA 695 Query: 181 RERVYADVKARAATRFASMTVARIVGDKDKELVMGSYAIPGTFTRDAWEKFVQDAFKEAA 240 RERVYADVKARAATRFASMTVARIVGDKD+ELVMGSYAIPGTFTRDAWEKFVQ+AFKEAA Sbjct: 696 RERVYADVKARAATRFASMTVARIVGDKDRELVMGSYAIPGTFTRDAWEKFVQEAFKEAA 755 Query: 241 NKELQSADWVLKTSTKDDLTLEGSPEQIQKALVSQYKTEYAREWQKFLQGVSIVELRNLD 300 NKELQSADWVLKTS KDDLTLEGSPEQIQKALV+QYKTEYAREWQKFLQGVSIVELRNLD Sbjct: 756 NKELQSADWVLKTSAKDDLTLEGSPEQIQKALVTQYKTEYAREWQKFLQGVSIVELRNLD 815 Query: 301 DATNAMNRLGDPLTSPLNKVINTVYDETSWDNPSLVDAGLANASKGFMGWFKETILRRSP 360 DATNAMNRLGDP+TSP+ KVINTVYDETSWDNPSLVDAGLANA GFMGWFKETILRRSP Sbjct: 816 DATNAMNRLGDPITSPMKKVINTVYDETSWDNPSLVDAGLANAKSGFMGWFKETILRRSP 875 Query: 361 APVPTQLNTDGSTAIPMGPVGREFAGVARLVVSKDKGNSLMRGYMENLSKLRTRLNTIKN 420 AP PTQ N DG+TAIPMGPVGREF+GVARLVVSKDK SL++ Y++NLSKLRTRLNTIKN Sbjct: 876 APAPTQFNADGTTAIPMGPVGREFSGVARLVVSKDKNGSLLQTYLDNLSKLRTRLNTIKN 935 Query: 421 QGDTGPGAKQLMQQTLEGNGSELSDSLKFVDEEMLPGLNDQQKTTLRPLLVRPLVQGFNA 480 QGDTGPGAKQLMQQTLEGNGSELSDSLKFVDEEMLPGLNDQQKT LRPLLVRPLVQGFNA Sbjct: 936 QGDTGPGAKQLMQQTLEGNGSELSDSLKFVDEEMLPGLNDQQKTVLRPLLVRPLVQGFNA 995 Query: 481 LVRPTEGEVNKIWRAQVYEPFQNNLAAKYPFSPNSKIEANSGEIGTVFGENGAISKFVTT 540 LVRPTEGEVNKIWRAQVYEPFQ+NLAAKYPFSPNSKIEANSGEIGTVFGENGAISKFVTT Sbjct: 996 LVRPTEGEVNKIWRAQVYEPFQSNLAAKYPFSPNSKIEANSGEIGTVFGENGAISKFVTT 1055 Query: 541 AMGPLVVRRGDTLSPRKWADMGITLSPAITTSFADWISAP-GGAGAGGGAAEAQTVFQIQ 599 AMGPLVVRRGDTLSPRKWADMGI LSPAIT++FA WISAP GG A GGA AQTVFQIQ Sbjct: 1056 AMGPLVVRRGDTLSPRKWADMGINLSPAITSNFASWISAPGGGGDANGGANSAQTVFQIQ 1115 Query: 600 PQPAPGALEYTIEIDGQQLRYRNTQAQWTNFVWPNPQGAPGAKVTAVTYDGRTVEVANQP 659 PQPAPGALEYTIEIDGQQLRYRNTQAQWTNF+WPNPQG PGA+VTA TYDGRT+EVA+QP Sbjct: 1116 PQPAPGALEYTIEIDGQQLRYRNTQAQWTNFIWPNPQGTPGARVTAQTYDGRTIEVASQP 1175 Query: 660 GRFGLERLINTAQRKRKDNGAFELSWTNDGVTVVVNLK 697 GRFGLERLIN+AQRKRKDNG FELSWTN+GVTVVVNLK Sbjct: 1176 GRFGLERLINSAQRKRKDNGVFELSWTNEGVTVVVNLK 1213 >gi|300313314|ref|YP_003777406.1| transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 1266 Score = 1276 bits (3302), Expect = 0.0, Method: Compositional matrix adjust. Identities = 626/699 (89%), Positives = 663/699 (94%), Gaps = 2/699 (0%) Query: 1 VGLGLYQGDLLERKLREEYFAGIKEIMLKPVSSNIETYLMEVNANSGKLEPMAKPPQAGG 60 + LGLYQGDLLERKLREEYFAGIKEIMLKPV+S+IE YL+EVNANS KLEPM++PPQA Sbjct: 516 IDLGLYQGDLLERKLREEYFAGIKEIMLKPVASSIENYLIEVNANSSKLEPMSRPPQADS 575 Query: 61 VTTVADNAAQAANALRTYKDSSATSVEDAYNALKTYLMLSDKSRAESSHLSDQITRFWRG 120 + T DN A NALRTYKDSSAT+VEDAYNALKTYLMLSDKSRAE+SHL+DQITRFWRG Sbjct: 576 LATTGDNNIHAGNALRTYKDSSATNVEDAYNALKTYLMLSDKSRAEASHLNDQITRFWRG 635 Query: 121 WLETNRGTMPREQMIRSAERLISFSLEQINDPSWPTVESKLTLVDQTRENLRRVVRGMPA 180 WLETNRGTMPREQMIRSAERLISFSLEQI+DPSWPT E+KLTLVDQTRENLR VVRGMPA Sbjct: 636 WLETNRGTMPREQMIRSAERLISFSLEQIDDPSWPTTENKLTLVDQTRENLRHVVRGMPA 695 Query: 181 RERVYADVKARAATRFASMTVARIVGDKDKELVMGSYAIPGTFTRDAWEKFVQDAFKEAA 240 RERVYADVKARAATRFASMTVARIVGDKD+ELVMGSYAIPGTFTR+AWEKFV+DAFKEAA Sbjct: 696 RERVYADVKARAATRFASMTVARIVGDKDRELVMGSYAIPGTFTRNAWEKFVEDAFKEAA 755 Query: 241 NKELQSADWVLKTSTKDDLTLEGSPEQIQKALVSQYKTEYAREWQKFLQGVSIVELRNLD 300 NKELQSADWVLKTS+K+DLTLEGSPEQIQKALVSQYK+EYAREWQKFLQGVSIVEL NLD Sbjct: 756 NKELQSADWVLKTSSKEDLTLEGSPEQIQKALVSQYKSEYAREWQKFLQGVSIVELHNLD 815 Query: 301 DATNAMNRLGDPLTSPLNKVINTVYDETSWDNPSLVDAGLANASKGFMGWFKETILRRS- 359 DATNAMNRLGDPLTSP+NKVI+TVYDETSWDNPSL+ +GLA AS+G GWFKET+LRRS Sbjct: 816 DATNAMNRLGDPLTSPINKVISTVYDETSWDNPSLIGSGLATASRGLSGWFKETVLRRSP 875 Query: 360 -PAPVPTQLNTDGSTAIPMGPVGREFAGVARLVVSKDKGNSLMRGYMENLSKLRTRLNTI 418 P P P QLNTDG AIPMGPV REFAGVARLVVSKDKGNSLMRGYMENLSKLRTRLNTI Sbjct: 876 APPPAPPQLNTDGGAAIPMGPVAREFAGVARLVVSKDKGNSLMRGYMENLSKLRTRLNTI 935 Query: 419 KNQGDTGPGAKQLMQQTLEGNGSELSDSLKFVDEEMLPGLNDQQKTTLRPLLVRPLVQGF 478 KNQGDTGPGAKQLMQQTL+G+GSELSD+LKFVDEEMLPGLNDQQKTTLRPLLVRPLVQGF Sbjct: 936 KNQGDTGPGAKQLMQQTLDGSGSELSDALKFVDEEMLPGLNDQQKTTLRPLLVRPLVQGF 995 Query: 479 NALVRPTEGEVNKIWRAQVYEPFQNNLAAKYPFSPNSKIEANSGEIGTVFGENGAISKFV 538 NALV PTEGE+NKIWRAQVYEPFQNNLA KYPFSP+SKIEANSGEI TVFGE+GAISKFV Sbjct: 996 NALVHPTEGELNKIWRAQVYEPFQNNLATKYPFSPSSKIEANSGEINTVFGESGAISKFV 1055 Query: 539 TTAMGPLVVRRGDTLSPRKWADMGITLSPAITTSFADWISAPGGAGAGGGAAEAQTVFQI 598 TTAMGPLVVRRGDTLSPRKWADMGITLSPAITTSFADWIS G GAGGGA +AQTVFQI Sbjct: 1056 TTAMGPLVVRRGDTLSPRKWADMGITLSPAITTSFADWISTHGSTGAGGGAGDAQTVFQI 1115 Query: 599 QPQPAPGALEYTIEIDGQQLRYRNTQAQWTNFVWPNPQGAPGAKVTAVTYDGRTVEVANQ 658 QPQPAPGALEYTIEIDGQQLRYRNTQAQW NFVWPNPQG+PGA+VTAVTYDGRTVEVA+Q Sbjct: 1116 QPQPAPGALEYTIEIDGQQLRYRNTQAQWVNFVWPNPQGSPGARVTAVTYDGRTVEVASQ 1175 Query: 659 PGRFGLERLINTAQRKRKDNGAFELSWTNDGVTVVVNLK 697 PGRFGLERLINTAQRKRKDNGAFELSWTN+GVTV+V+LK Sbjct: 1176 PGRFGLERLINTAQRKRKDNGAFELSWTNEGVTVMVSLK 1214 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.314 0.130 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,100,864 Number of extensions: 83804 Number of successful extensions: 208 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 204 Number of HSP's successfully gapped: 2 Length of query: 701 Length of database: 1,619,870 Length adjustment: 92 Effective length of query: 609 Effective length of database: 1,184,250 Effective search space: 721208250 Effective search space used: 721208250 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 134 (56.2 bits)