BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0024.0062.p
         (328 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310092|ref|YP_003774184.1| hypothetical protein Hsero_0757...   560   e-161
gi|300313315|ref|YP_003777407.1| hypothetical protein Hsero_4028...   543   e-156

>gi|300310092|ref|YP_003774184.1| hypothetical protein Hsero_0757
           [Herbaspirillum seropedicae SmR1]
          Length = 328

 Score =  560 bits (1442), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 282/328 (85%), Positives = 302/328 (92%)

Query: 1   MSATGTPIKIGYFGKIPARGDFIKATDNAALITLLDNWLAQTMELLSRDARWKIIYDGVK 60
           MSATGTPIK+GYFGKIP RGDFIKATDNA+LITLLDNWLAQTME+L+RD RWKIIYDGVK
Sbjct: 1   MSATGTPIKVGYFGKIPTRGDFIKATDNASLITLLDNWLAQTMEMLARDPRWKIIYDGVK 60

Query: 61  PLHFVVMGPRSRRAVAGHLRASGDQSQRRFPFISMSAFDIEDPVAFVSNSPLILSRLWSR 120
           PLHFVVMGPRSRRAVAGHLRAS DQSQRRFPFISMSA ++EDP AFV N PLILSRLW+R
Sbjct: 61  PLHFVVMGPRSRRAVAGHLRASSDQSQRRFPFISMSAIEVEDPGAFVRNGPLILSRLWTR 120

Query: 121 LESLTQSVLTAPDPAQPLQTLASTTLELDINSAGYTAAFADFLDLQTTGSLQQMLAEAGF 180
           LE+LT  VL+A DPA PLQTLA+TTLELDINSAGY AAFADFLD+QT G LQQML +AGF
Sbjct: 121 LETLTNGVLSANDPAAPLQTLATTTLELDINSAGYNAAFADFLDMQTLGGLQQMLEQAGF 180

Query: 181 TGNLRQLLLALGLLLQPVMASTSSRLDKNLILPLPRDPMYRSLVASFWMHLITPFLTRAD 240
           TG  RQLLLALGLLLQPVMASTSSRLDKNLILPLPRDPMYR+LVASFWM+LITPFL+RAD
Sbjct: 181 TGTPRQLLLALGLLLQPVMASTSSRLDKNLILPLPRDPMYRALVASFWMNLITPFLSRAD 240

Query: 241 FELALFLTQLDDQPAMFLGFSGASPRTLHSVMDIQAGAEHNIPFDDADWVEEHVGSDYGI 300
           FELALFLT LD+QP+M LGFSGASPRTLHSV+D QAGAEHNI FD ADW+EEHV SDYGI
Sbjct: 241 FELALFLTILDEQPSMILGFSGASPRTLHSVLDSQAGAEHNIAFDQADWIEEHVSSDYGI 300

Query: 301 QKLSSYLAHPDLSLTSALASFREAFIGA 328
           QKLSSYL+HP LSL SAL SFREAFIGA
Sbjct: 301 QKLSSYLSHPGLSLKSALDSFREAFIGA 328


>gi|300313315|ref|YP_003777407.1| hypothetical protein Hsero_4028
           [Herbaspirillum seropedicae SmR1]
          Length = 330

 Score =  543 bits (1399), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 278/330 (84%), Positives = 296/330 (89%), Gaps = 2/330 (0%)

Query: 1   MSATGTPIKIGYFGKIPARGDFIKATDNAALITLLDNWLAQTMELLSRDARWKIIYDGVK 60
           MSATGT IKIGYFGKIPARGDFIKATD AALITLLDNWLAQ MELLSRDARWKIIYDGVK
Sbjct: 1   MSATGTHIKIGYFGKIPARGDFIKATDQAALITLLDNWLAQAMELLSRDARWKIIYDGVK 60

Query: 61  PLHFVVMGPRSRRAVAGHLRASGDQSQRRFPFISMSAFDIEDPVAFVSNSPLILSRLWSR 120
           PLHFVVMGPRSRRAVAGHLRAS DQSQRRFPFISMSAFDI+DPVAFV NSPLIL+RLWSR
Sbjct: 61  PLHFVVMGPRSRRAVAGHLRASSDQSQRRFPFISMSAFDIDDPVAFVGNSPLILARLWSR 120

Query: 121 LESLTQSVLTAPDPAQPLQTLASTTLELDI--NSAGYTAAFADFLDLQTTGSLQQMLAEA 178
           +ES  Q VLT PDP Q LQ +ASTT+ELDI  N  GY AAF DFL+L TTGSLQQMLA+A
Sbjct: 121 MESQIQEVLTTPDPGQSLQAMASTTVELDIDSNGYGYGAAFTDFLELHTTGSLQQMLADA 180

Query: 179 GFTGNLRQLLLALGLLLQPVMASTSSRLDKNLILPLPRDPMYRSLVASFWMHLITPFLTR 238
           GF GNLRQLLLALGLLL PVM STSSRLDKNLILPLP D MYR LVASFWMHLITPFLTR
Sbjct: 181 GFNGNLRQLLLALGLLLHPVMVSTSSRLDKNLILPLPHDTMYRGLVASFWMHLITPFLTR 240

Query: 239 ADFELALFLTQLDDQPAMFLGFSGASPRTLHSVMDIQAGAEHNIPFDDADWVEEHVGSDY 298
           ADFEL+LFLT++++QP MFLGFSGASPRTLHSVMD  AGAEHNI FDDA+WVEEHVG +Y
Sbjct: 241 ADFELSLFLTRMEEQPCMFLGFSGASPRTLHSVMDTVAGAEHNISFDDAEWVEEHVGGNY 300

Query: 299 GIQKLSSYLAHPDLSLTSALASFREAFIGA 328
           G+QKLSSYLAHP+LSL SA+ SF +AF GA
Sbjct: 301 GVQKLSSYLAHPELSLRSAIDSFHDAFTGA 330


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.135    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 998,125
Number of extensions: 39165
Number of successful extensions: 117
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 116
Number of HSP's successfully gapped: 2
Length of query: 328
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 242
Effective length of database: 1,212,660
Effective search space: 293463720
Effective search space used: 293463720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)