BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0024.0061.p
         (228 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310091|ref|YP_003774183.1| outer membrane protein and rela...   411   e-116
gi|300313316|ref|YP_003777408.1| lipoprotein [Herbaspirillum ser...   384   e-108
gi|300312990|ref|YP_003777082.1| signal peptide protein [Herbasp...    86   2e-18
gi|300313671|ref|YP_003777763.1| OmpA family protein [Herbaspiri...    82   4e-17

>gi|300310091|ref|YP_003774183.1| outer membrane protein and related
           peptidoglycan-associated (lipo)proteins [Herbaspirillum
           seropedicae SmR1]
          Length = 271

 Score =  411 bits (1056), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 204/212 (96%), Positives = 209/212 (98%)

Query: 17  ALARLREVYGADRVVDQIAVGQVVLPANWNNHVQKLISPNLKAVSRGQLKIDGTSVSISG 76
           ALARLREVYGADRVVDQIAVGQVVLPANWNNHVQ LISPNLKAVSRGQLKIDGT+VSI+G
Sbjct: 60  ALARLREVYGADRVVDQIAVGQVVLPANWNNHVQSLISPNLKAVSRGQLKIDGTTVSITG 119

Query: 77  EVSNEAQRQQIASDMASSLNSSYTVNNGLRVSTSEQGLLDNALANRVVAFESGQATLTPE 136
           EV+NEAQRQQIASDMASSLNSSYTVNNGLRVSTSEQGLLDNALANRVV+FESGQATLTPE
Sbjct: 120 EVANEAQRQQIASDMASSLNSSYTVNNGLRVSTSEQGLLDNALANRVVSFESGQATLTPE 179

Query: 137 GKRILDEIAATMLKLKGRHVEIIGNTDNEGLRASNISLSLARADAVKAYLSAKGVDESLL 196
           GKRILDEIAATMLKLKGRHVEIIGNTDNEGLRASNISLSLARADAVKAYL AKGVDESLL
Sbjct: 180 GKRILDEIAATMLKLKGRHVEIIGNTDNEGLRASNISLSLARADAVKAYLGAKGVDESLL 239

Query: 197 TTSGQGPDRPVASNNTAEGRAKNRRIEFRIAK 228
           +TSGQGPDRPVASN TAEGRAKNRRIEFRIAK
Sbjct: 240 STSGQGPDRPVASNATAEGRAKNRRIEFRIAK 271


>gi|300313316|ref|YP_003777408.1| lipoprotein [Herbaspirillum
           seropedicae SmR1]
          Length = 267

 Score =  384 bits (985), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 189/212 (89%), Positives = 203/212 (95%)

Query: 17  ALARLREVYGADRVVDQIAVGQVVLPANWNNHVQKLISPNLKAVSRGQLKIDGTSVSISG 76
           AL RLRE+YG DRVVDQI+VG VVLPANWNNHVQKLISPNLKAV +GQLKIDGT+VSISG
Sbjct: 56  ALTRLRELYGHDRVVDQISVGPVVLPANWNNHVQKLISPNLKAVRQGQLKIDGTNVSISG 115

Query: 77  EVSNEAQRQQIASDMASSLNSSYTVNNGLRVSTSEQGLLDNALANRVVAFESGQATLTPE 136
           EVS+EAQRQQIASDMA+SLNSSY +NNGLRVSTSEQG+LDN LANRVV+FESG+ATLTPE
Sbjct: 116 EVSHEAQRQQIASDMATSLNSSYIINNGLRVSTSEQGVLDNTLANRVVSFESGRATLTPE 175

Query: 137 GKRILDEIAATMLKLKGRHVEIIGNTDNEGLRASNISLSLARADAVKAYLSAKGVDESLL 196
           GKRILDEIAATML+LKGR VEIIGNTDNEGLRASNISLSLARADAVKAYLS KGVD+SLL
Sbjct: 176 GKRILDEIAATMLQLKGRRVEIIGNTDNEGLRASNISLSLARADAVKAYLSTKGVDDSLL 235

Query: 197 TTSGQGPDRPVASNNTAEGRAKNRRIEFRIAK 228
           TTSGQGPDRPVASN T+EGRA+NRRIEFRIAK
Sbjct: 236 TTSGQGPDRPVASNATSEGRARNRRIEFRIAK 267


>gi|300312990|ref|YP_003777082.1| signal peptide protein
           [Herbaspirillum seropedicae SmR1]
          Length = 203

 Score = 86.3 bits (212), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 49/104 (47%), Positives = 68/104 (65%), Gaps = 6/104 (5%)

Query: 126 FESGQATLTPEGKRILDEIAATMLKLKGRHVEII---GNTDNEGLRASNISLSLARADAV 182
           F+  +ATL P GK  LDE+      LK  ++E+I   G+TD+ G  A N  LS+ RA++V
Sbjct: 98  FDFDKATLKPAGKAKLDELVGN---LKAINLEVIIAVGHTDSIGSVAYNQKLSVRRAESV 154

Query: 183 KAYLSAKGVDESLLTTSGQGPDRPVASNNTAEGRAKNRRIEFRI 226
           KAYL +KGV+ + + T G+G  +PVA N TA GRAKNRR+E  +
Sbjct: 155 KAYLVSKGVEANRVYTEGKGKSQPVADNKTAAGRAKNRRVEIEV 198


>gi|300313671|ref|YP_003777763.1| OmpA family protein
           [Herbaspirillum seropedicae SmR1]
          Length = 241

 Score = 82.0 bits (201), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 66/105 (62%)

Query: 124 VAFESGQATLTPEGKRILDEIAATMLKLKGRHVEIIGNTDNEGLRASNISLSLARADAVK 183
           ++F++G+A + PE + +LD  AAT+++     V I+G+TDN G  A N  LSL RA   +
Sbjct: 110 ISFDTGRADIKPEMRPVLDRFAATLVENPATTVTIVGHTDNTGSDAINDPLSLQRASRTR 169

Query: 184 AYLSAKGVDESLLTTSGQGPDRPVASNNTAEGRAKNRRIEFRIAK 228
            YLS++GV  +  +  G+G   P+ +N +   RA+NRR+E  +A+
Sbjct: 170 DYLSSRGVAANRFSIQGRGSHEPLVANTSDANRARNRRVEIFVAE 214


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.313    0.128    0.344 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 655,665
Number of extensions: 25177
Number of successful extensions: 94
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 93
Number of HSP's successfully gapped: 4
Length of query: 228
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 146
Effective length of database: 1,231,600
Effective search space: 179813600
Effective search space used: 179813600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 129 (54.3 bits)