BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0024.0060.p
         (375 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313317|ref|YP_003777409.1| hypothetical protein Hsero_4030...   651   0.0  
gi|300310090|ref|YP_003774182.1| hypothetical protein Hsero_0755...   607   e-175

>gi|300313317|ref|YP_003777409.1| hypothetical protein Hsero_4030
           [Herbaspirillum seropedicae SmR1]
          Length = 375

 Score =  651 bits (1679), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 315/375 (84%), Positives = 334/375 (89%)

Query: 1   MKLPTLKSLLGVKPPTSAVDPLLKPVNDNHPGGEDLSFTADLDAIAEARRFDDPTLDQGE 60
           MKLPTLKS LG K PT+ +D LLKP+++ HPGGEDLSFT DLDAIA+ARRFDDPTLDQGE
Sbjct: 1   MKLPTLKSALGTKLPTTVIDVLLKPISNEHPGGEDLSFTTDLDAIAQARRFDDPTLDQGE 60

Query: 61  WVTDIKEADWIFVEQRCAQLIETRSKDLRLAVWYSEAACKTRGLRGLGDGFLLVAGLFDQ 120
           WVTDIKEADW FVEQRCAQLIETRSKDLRLAVWY EAACKTRGLRGLGDGFLL+AGLFDQ
Sbjct: 61  WVTDIKEADWSFVEQRCAQLIETRSKDLRLAVWYGEAACKTRGLRGLGDGFLLMAGLFDQ 120

Query: 121 FWDHLYPLSEDGDHDRRVGNLTWLLSRSVQMSREIPLTEGRGSAFSLLDFDAARTRAANA 180
           FWDHLYPLSEDGDHDRRVGNLTWLLSRSVQMS EIPLTEGRGSAFSL DF++ARTRAANA
Sbjct: 121 FWDHLYPLSEDGDHDRRVGNLTWLLSRSVQMSHEIPLTEGRGSAFSLFDFNSARTRAANA 180

Query: 181 ERIANEGGQPEEGIKLAVMESARKRSSHAFYEAMLADTQYCLQCLEQLEKSVDQRLGVDG 240
           ERI NEGG PEEG+KLAVMESARKRSSHAFYEAML D QYC  CLEQLE  VD RLGVDG
Sbjct: 181 ERIVNEGGLPEEGVKLAVMESARKRSSHAFYEAMLEDAQYCRHCLEQLENIVDHRLGVDG 240

Query: 241 PGFSSAREAITLVHDTIARFAADTGLRSVAPAEIAVADENTAAVAAQLSEQGSPVAAPVQ 300
           PGFS+AREA  LVHDTI RFAA+TGLRS   AE  + D + AAVAAQL+  G   +A +Q
Sbjct: 241 PGFSAAREATKLVHDTIVRFAAETGLRSAVSAESILIDGDDAAVAAQLTGSGGSASAVLQ 300

Query: 301 HQGPIRTRAEAIAQLRAVAEFFRRTEPHSPVAHLADKAAQWGEMPLHAWLKTVIKDNAAL 360
           HQGPIRTRAEAI QLRAVAEFFRR+EPHSPVAHLADKAAQWGEMPLHAWL+TVIKD AAL
Sbjct: 301 HQGPIRTRAEAIGQLRAVAEFFRRSEPHSPVAHLADKAAQWGEMPLHAWLRTVIKDGAAL 360

Query: 361 SHVEELLGLQPPPQD 375
           SHVEELLGLQ P QD
Sbjct: 361 SHVEELLGLQAPQQD 375


>gi|300310090|ref|YP_003774182.1| hypothetical protein Hsero_0755
           [Herbaspirillum seropedicae SmR1]
          Length = 375

 Score =  607 bits (1564), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 299/372 (80%), Positives = 330/372 (88%)

Query: 1   MKLPTLKSLLGVKPPTSAVDPLLKPVNDNHPGGEDLSFTADLDAIAEARRFDDPTLDQGE 60
           MKLPTLKSLLG KP  SA++PLL P+NDN P GEDLSFTADLDAIAEARRFDDPTLDQGE
Sbjct: 1   MKLPTLKSLLGGKPAMSAIEPLLNPINDNAPAGEDLSFTADLDAIAEARRFDDPTLDQGE 60

Query: 61  WVTDIKEADWIFVEQRCAQLIETRSKDLRLAVWYSEAACKTRGLRGLGDGFLLVAGLFDQ 120
           WV DIKEADW FVEQ CA+L+E RSKDLRLAVWYSEAACKTRGLRGLGDGFLLVAGLFD+
Sbjct: 61  WVIDIKEADWPFVEQHCARLLEGRSKDLRLAVWYSEAACKTRGLRGLGDGFLLVAGLFDR 120

Query: 121 FWDHLYPLSEDGDHDRRVGNLTWLLSRSVQMSREIPLTEGRGSAFSLLDFDAARTRAANA 180
           FWD++YP SE+GDHD+RVGNLTWLL+RSV MSREI LTEGRGSA+SL+DF+AARTRAANA
Sbjct: 121 FWDNMYPQSEEGDHDQRVGNLTWLLARSVAMSREIALTEGRGSAYSLIDFEAARTRAANA 180

Query: 181 ERIANEGGQPEEGIKLAVMESARKRSSHAFYEAMLADTQYCLQCLEQLEKSVDQRLGVDG 240
           ERIANEGGQPEEG+KLAVME+ARKRSSHAFYEAMLAD+QYC+Q LEQLEKSVD RLGV+G
Sbjct: 181 ERIANEGGQPEEGVKLAVMEAARKRSSHAFYEAMLADSQYCVQALEQLEKSVDARLGVNG 240

Query: 241 PGFSSAREAITLVHDTIARFAADTGLRSVAPAEIAVADENTAAVAAQLSEQGSPVAAPVQ 300
           PGFS+AREA+  V +T+ARFAADTGLRS    + A +     A A   S + +P A  + 
Sbjct: 241 PGFSAAREALIAVRETVARFAADTGLRSPQLQDSAASGAAADASAPPTSVEETPPAGAMM 300

Query: 301 HQGPIRTRAEAIAQLRAVAEFFRRTEPHSPVAHLADKAAQWGEMPLHAWLKTVIKDNAAL 360
            QGPIRTRAEAIAQLRAVAEFFRRTEPHSPVAHLADKAAQWGEMPLHAWLK+VIKD++ L
Sbjct: 301 QQGPIRTRAEAIAQLRAVAEFFRRTEPHSPVAHLADKAAQWGEMPLHAWLKSVIKDDSTL 360

Query: 361 SHVEELLGLQPP 372
           SHVEELLGL PP
Sbjct: 361 SHVEELLGLLPP 372


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.133    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,176,081
Number of extensions: 46135
Number of successful extensions: 186
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 186
Number of HSP's successfully gapped: 2
Length of query: 375
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 288
Effective length of database: 1,207,925
Effective search space: 347882400
Effective search space used: 347882400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)