BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0024.0057.p
         (1009 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310083|ref|YP_003774175.1| VGR-related type VI secretion s...  1385   0.0  
gi|300310071|ref|YP_003774163.1| VGR-related protein [Herbaspiri...   402   e-113
gi|300310098|ref|YP_003774190.1| VGR-related protein [Herbaspiri...   371   e-103
gi|300310274|ref|YP_003774366.1| VGR-related protein [Herbaspiri...   348   1e-96
gi|300313606|ref|YP_003777698.1| VGR-related type VI secretion s...   311   1e-85

>gi|300310083|ref|YP_003774175.1| VGR-related type VI secretion
           system protein [Herbaspirillum seropedicae SmR1]
          Length = 944

 Score = 1385 bits (3585), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 707/930 (76%), Positives = 793/930 (85%), Gaps = 12/930 (1%)

Query: 1   MIASAIAALAGAWNQSTRVMRLYMAAGAELGAETLMAEKLQAVEQISAFQDERGAMDGKV 60
           M  S + AL GAW+QS RVMRL+     + G   LMAE+LQAVEQ+   +D   A+D   
Sbjct: 1   MNLSDLPALFGAWSQSARVMRLHTPLDQDYGPHALMAERLQAVEQVGPGEDS-SAIDQA- 58

Query: 61  DIAGYRLQLSCLSLNAGISLRKLLGQPVLVELDTDGVPRAFHGHVTDCRMEGANGGMARY 120
            IAGYRLQLSCLSLNA ISLRKLLGQPVL+ELDTDG  RAFHGHVT CRMEGANGGMARY
Sbjct: 59  -IAGYRLQLSCLSLNADISLRKLLGQPVLLELDTDGGARAFHGHVTACRMEGANGGMARY 117

Query: 121 VLTIEPWLAFLQHRRDSAVFQDMTVPDIIESVFRDYQGQGKLQPAWRLDLQDVSVYPRRS 180
           +LTIEPWL+FL+HRRDSAVFQDM+ P IIE+VF DY+GQG+LQPAWRLDLQD S Y +RS
Sbjct: 118 LLTIEPWLSFLRHRRDSAVFQDMSAPAIIEAVFADYRGQGRLQPAWRLDLQDASAYAKRS 177

Query: 181 LATQYQETDLAFVERLLAEEGLFYYIEHTGDPSSASLGTHTVVIADHNGSFKPNARDRIA 240
           LATQYQETDLAFV RL+ EEGLFYYIEH GD +SASLG+HTVVIADHNGSFKPNAR  +A
Sbjct: 178 LATQYQETDLAFVTRLMVEEGLFYYIEHQGDSNSASLGSHTVVIADHNGSFKPNARSTVA 237

Query: 241 FSQPGAVMSQDSIDRWRSVRRWQSNAVEILTWDYRQAAVREASSMSSTGGDDAHGSQGET 300
           F+Q  AVM+QD+IDRWRSVRRWQ+NAVEILTWDYRQ AVR AS+ SS  G++AH      
Sbjct: 238 FAQTNAVMAQDNIDRWRSVRRWQTNAVEILTWDYRQTAVRAASTASS--GENAHDK---- 291

Query: 301 PGGLVLTLRDAPGVYANENRAQAERQARNQMQAIEARNEIFTGTGTVRSLRPATSFTLTG 360
              LVLT RDAPG Y NE+  QA+RQA NQMQAIE RN++FTG GTVRS  P T+FTLTG
Sbjct: 292 ---LVLTSRDAPGQYINESPEQAQRQALNQMQAIEVRNKVFTGAGTVRSFLPGTTFTLTG 348

Query: 361 HYDHIGGADDQFALLRVVHQAHNNLNADLKAEAMRLLGEAALDEGAAAGSLLDAALQPAR 420
           HYDH GG DDQF LLRVVHQAHNNL+ADLKA    LLG+A LD+    GSLLD AL+ A 
Sbjct: 349 HYDHDGGDDDQFVLLRVVHQAHNNLSADLKAGVTALLGQAQLDDHDHKGSLLDTALRSAD 408

Query: 421 GDARPVYRNRFEAIRNKIPYRPLLTDAEGKRLHPKPVASGQQTAVVVGAQGQAVHTDRDN 480
             ARPVYRNRFEAIRNKIPYRPLL DA+G+RL+PKP A GQQ+AVVVGAQGQAVHTDRDN
Sbjct: 409 TQARPVYRNRFEAIRNKIPYRPLLVDAQGERLYPKPQAHGQQSAVVVGAQGQAVHTDRDN 468

Query: 481 RIRVQFHWQRGERSHSGLSSPAPEGHVGAPANEQSGTWVRVLAGIAPTAGANWGGQAVPR 540
           RIRVQFHWQRGERSHSGLSSP P+ HVGAPANEQ+GTWVRVLAG+APTAGANWGGQAVPR
Sbjct: 469 RIRVQFHWQRGERSHSGLSSPTPDDHVGAPANEQAGTWVRVLAGLAPTAGANWGGQAVPR 528

Query: 541 VGQEVLIDFIEGDIDRPVVIGTLYNGRGQDNAQGNQAGQGAGAATGNAPAWFPGDTDGHQ 600
           VGQEVLIDFIEGDIDRPVVIGTLYNGRG DNAQGNQAGQGAG+ATGNAPAWFPG +  H 
Sbjct: 529 VGQEVLIDFIEGDIDRPVVIGTLYNGRGVDNAQGNQAGQGAGSATGNAPAWFPGSSGAHN 588

Query: 601 HAAVLSGIKTQALGASQSGSGAYNQLVFDDTPGQSRASLQQHADGHDGASELNVGLLRQQ 660
           HAAVLSGIKTQAL ASQSG G YNQLVFDD+PGQ+RA+LQQHAD HDGASELN+GLLRQQ
Sbjct: 589 HAAVLSGIKTQALSASQSGGGGYNQLVFDDSPGQARAALQQHADAHDGASELNLGLLRQQ 648

Query: 661 TDNQRLAATGQGFELKTRYSAAVRGGQGLLLSTEKSSGAQLDVRGALSQLVDSVDKQKQL 720
           TDNQRLA TGQGFELKT YSAA+R GQGLL+STEKS  AQLD+   LSQL +S  KQ+QL
Sbjct: 649 TDNQRLATTGQGFELKTLYSAALRAGQGLLVSTEKSISAQLDMTQGLSQLSESAQKQQQL 708

Query: 721 AETAQKHNAKFEGETEAGKLPAVESLAESVEVLKASATASSGNGSGGEGSEASTTGATAF 780
           AETAQKHNA+ EGE++A KLPAVE++ ES+EVLKA+ +AS+G+        ++TT  TAF
Sbjct: 709 AETAQKHNARLEGESDAAKLPAVEAMGESIEVLKATQSASTGSSGSDGQGSSATTATTAF 768

Query: 781 SAPQLQLSSPAGIAAATPASAILAAGVTSSVTAGKDINQIAQGNLHHLAKAGISLFTYGK 840
           SAPQLQLSSPAGIAA TPASAI+AAGVTSSVTAGKDINQIAQGNLH+L+K+GISLFTYGK
Sbjct: 769 SAPQLQLSSPAGIAAVTPASAIIAAGVTSSVTAGKDINQIAQGNLHYLSKSGISLFTYGK 828

Query: 841 VGDASKPVQDAGMALHAASGKVNVQSQAGKTLMTAAKQVTVASVGQHLRVAAKQHVMFTA 900
             + SKP Q+ GMALHAA+GKV+VQSQAG+TL+T+AKQ+TVASVG+ + VA KQHV   A
Sbjct: 829 ASNGSKPNQETGMALHAAAGKVSVQSQAGQTLLTSAKQLTVASVGKDVSVAGKQHVQLAA 888

Query: 901 QGAWMKIEGGNIEIHGPGAMEFKASVKELT 930
           QGAW+++EGGNIE+HGPGAMEF+AS KELT
Sbjct: 889 QGAWLRLEGGNIEVHGPGAMEFRASAKELT 918


>gi|300310071|ref|YP_003774163.1| VGR-related protein [Herbaspirillum
            seropedicae SmR1]
          Length = 954

 Score =  402 bits (1033), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 330/1037 (31%), Positives = 491/1037 (47%), Gaps = 138/1037 (13%)

Query: 2    IASAIAALAGA-WNQSTRVMRLYMAAGAELGAETLMAEKLQAVEQISAFQDERGAMDGKV 60
            + +A+  L G   +Q+ R++ +  A  A L  ETL  E+ +  E ++             
Sbjct: 9    LTAAVTELFGTGLSQNARLITMTTAQSAGL-PETLAVERFEGEESVND------------ 55

Query: 61   DIAGYRLQLSCLSLNAGISLRKLLGQPV-LVELDTDGVPRAFHGHVTDCRMEGANGGMAR 119
                +R  +  LS++  + L++ +G  + L  L  DG  RA+HG+ T     GA+GG+AR
Sbjct: 56   ---NFRFDIDALSISTDLDLKQFIGAEISLRLLQADGGTRAWHGYCTQASWLGADGGLAR 112

Query: 120  YVLTIEPWLAFLQHRRDSAVFQDMTVPDIIESVFRDYQGQGKLQPAWRLDLQDVSVYPRR 179
            Y L +E +LAFL  R DS +FQDMTV DI  +V ++Y       P     L+      +R
Sbjct: 113  YRLRLESFLAFLDRRHDSFLFQDMTVTDIAAAVLKEY-------PQANFSLEVTQTLAKR 165

Query: 180  SLATQYQETDLAFVERLLAEEGLFYYIEHTGDPS------SASLGTHTVVIADHNGSFK- 232
             + TQY+ETD AF+ R+LA EGL +  EH  D +      S     H +VI D N     
Sbjct: 166  DICTQYRETDYAFLRRILASEGLNFRFEHEQDDATQQHDQSQPHARHKLVIFDRNAKAPA 225

Query: 233  -PNARDRIAFSQPGAVMSQDSIDRWRSVRRWQSNAVEILTWDYRQAAV---REASSMSST 288
             P   + I F +  A+ + D+I  + +VR  + N V + +W   + +     E S++ + 
Sbjct: 226  LPGGDEYIRFHRVAAMEASDAITDFAAVRSVRPNGVALASWHPEKLSSPSHEEGSTLDA- 284

Query: 289  GGDDAHGSQGETPGGLVLTLRDAPGVYANENRAQAERQARNQMQAIEARNEIFTGTGTVR 348
                     GE P    L + D  G     ++  A   A+  +QA+E +N+ F G G  R
Sbjct: 285  ---------GELPS---LPVYDGTGQQDFADQDAAAAHAQLMLQALEMQNKRFEGAGAAR 332

Query: 349  SLRPATSFTLTGHYDHIGGADDQFALLRVVHQAHNNLNADLKAEAMRLLGEAALDEGAAA 408
             L     FTL  H  +  G ++ F ++ V H A NN++A++     R+L  AA       
Sbjct: 333  QLAAGARFTLLQHERYPEG-ENAFKVVSVRHAARNNVSANI----TRILAPAA------- 380

Query: 409  GSLLDAALQPARGDARP--VYRNRFEAIRNKIPYRPLLTDAEGKRLHPKPVASGQQTAVV 466
            G+L   +    R D      YRN F AIR+ +P  P    A  +RL  KP A G QTA+V
Sbjct: 381  GALFGGSAAAERDDDLQAGTYRNSFTAIRDSVPMVPA---AIAERL--KPTARGTQTALV 435

Query: 467  VGAQGQAVHTDRDNRIRVQFHWQRGERSHSGLSSPAPEG----------HVGAPANEQSG 516
             GA   AV TDR++R++VQFHWQRG+       SP P G             A  N+ SG
Sbjct: 436  TGAADAAVTTDRNHRVKVQFHWQRGK-------SPNPGGLRETGNLDDKDGNANGNDSSG 488

Query: 517  TWVRVLAGIAPTAGANWGGQAVPRVGQEVLIDFIEGDIDRPVVIGTLYNGRGQDNAQGNQ 576
            TW+RV       +G NWG Q +PRVG EVL+DFIEGDIDRPVV+  LYNG          
Sbjct: 489  TWIRVAEA---QSGPNWGSQFIPRVGSEVLVDFIEGDIDRPVVVAQLYNG---------- 535

Query: 577  AGQGAGAATGNAPAWFPGDTDGHQHAAVLSGIKTQALGASQSGSGAYNQLVFDDTPGQSR 636
                      +AP +  G   G  HA  +SG  + A      GSG +NQ V DDT  Q R
Sbjct: 536  ---------SDAPPFPAGADSGINHAGSISGWHSTA----HDGSG-FNQWVVDDTQSQLR 581

Query: 637  ASLQQHADGHDGASELNVGLLRQQTDN--QRLAATGQGFELKTRYSAAVRGGQGLLLSTE 694
              L          S+LN+G L +Q D   QR +  GQGFEL++     VRGG+GLLLST 
Sbjct: 582  MRLASST----AKSQLNLGHLVEQADTGAQRGSYRGQGFELRSDAWGVVRGGEGLLLSTT 637

Query: 695  -------KSSGAQLDVRGALSQLVDSVDKQKQLAETAQKHNAKFEGETEAGKLPAVESLA 747
                     +G Q+D  GA++QL  +    K LA+T      + +  +    L A     
Sbjct: 638  ARPLNGASVTGTQMDAAGAIAQLKGA----KSLAQTMSDSATQQQALSSTQALQAKTDFL 693

Query: 748  ESVEVLKASATASSGNGSGGEGSEASTTGATAFSAPQLQLSSPAGIAAATPASAILAAGV 807
              ++        +S NG     S+ ST    A  A  ++  + A +   +P+S    +  
Sbjct: 694  ALIDPSDQGKHPASVNGQDALKSDGSTRNTDA--AQPVEKFAKAAVLMDSPSSINWTSNA 751

Query: 808  TSSVTAGKDINQIAQGNLHHLAKAGISLFTYGKVGDASKPVQDAGMALHAASGKVNVQSQ 867
            ++ + A +++    QG++H  A    S          S    D G+   AA+G V++Q+ 
Sbjct: 752  STLLYAAENLQWTTQGDVHWSAADTASAAAGKAASFYS---HDGGIQAFAANGPVSLQAH 808

Query: 868  AGKTLMTAAKQVTVASVGQHLRVAAKQHVMFTAQGAWMKIEGGNIEIHGPGAMEFKASVK 927
                 + A K VTV SV   + + A+Q ++  A  A + +EGGNI    PG    K +  
Sbjct: 809  TDALEILADKDVTVTSVNDSIEIKARQKIVLQAGQASVTLEGGNITFACPGTFSVKGATH 868

Query: 928  ELTGPVDGAGELPRMPEAK-PAYHEAFRVIDKETGEPVSYTPYRIENAKGEVIASGITDE 986
               G    + +L  +P+ K   + EAF V+    G P+S  PYRI+++ G+ +A+   D 
Sbjct: 869  AFPGGASVSPDLMALPDTKYKLFDEAF-VVKDPNGTPLSDIPYRIKSSAGDQLATTAKD- 926

Query: 987  AGNTVRSFTKGIEELKI 1003
             G + R  T+  E ++ 
Sbjct: 927  -GMSERVSTEASENVEF 942


>gi|300310098|ref|YP_003774190.1| VGR-related protein
           [Herbaspirillum seropedicae SmR1]
          Length = 982

 Score =  371 bits (952), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 346/1025 (33%), Positives = 475/1025 (46%), Gaps = 165/1025 (16%)

Query: 15  QSTRVMRLY-MAAGAELGAETLMAEKLQAVEQISAFQDERGAMDGKVDIAGYRLQLSCLS 73
           Q T   RLY ++ G    A  L+ E   A E + A               G R ++  LS
Sbjct: 10  QFTGASRLYSLSLGDAAPAGELLVEAFAASEGLHAV--------------GLR-EVIVLS 54

Query: 74  LNAGISLRKLLGQ-PVLVELDTDGVPRAFHGHVTDCRMEGANGGMARYVLTIEPWLAFLQ 132
           L+AG+ L+ L+GQ   LV   +DG    F G V +    G+ GG+ARY L I PW+  L 
Sbjct: 55  LDAGLRLKSLIGQRATLVTTLSDGSRTQFSGLVNEAAKLGSEGGLARYRLRIVPWVWLLS 114

Query: 133 HRRDSAVFQDMTVPDIIESVFRDYQGQGKLQPAWRLDLQDVSVYPR----RSLATQYQET 188
              +S V+QD TV DI+E VF DY        AW     +V+ + +    RS   QY+E+
Sbjct: 115 QSHNSRVWQDKTVIDIVEDVFADYAPHA----AWTWT-DEVAPFMQQVQPRSYTIQYRES 169

Query: 189 DLAFVERLLAEEGLFYYIEHTGDPSSASLGTHTVVIADHNG---------SFKPNARDRI 239
           +LAFV RLLA EGL + +E + D +S   G   V+ AD            S  P     I
Sbjct: 170 NLAFVSRLLAAEGLSWRVEESADAAS---GHRLVLFADSTSPRAFPEDLTSTSPLGGSGI 226

Query: 240 AFSQPGAVMSQDSIDRWRSVRRWQSNAVEILTWDYR--QAAVREASSMSSTGGDDAHGSQ 297
            F    A   QDSI    + R  Q  +  +L++DY+  QA      +    GG DA    
Sbjct: 227 RFHAGTAREEQDSIQALAARRALQPASFTLLSYDYKSKQAVATSLPTRHEFGGKDAP--- 283

Query: 298 GETPGGLVLTLRDAPGVYANENRAQAERQARNQMQAIEARNEIFTGTGTVRSLRPATSFT 357
                   L   D+PG+YA  + A+A+  AR  ++A EARN+++    TVR+LRP T FT
Sbjct: 284 -------RLESYDSPGLYAYTDAAEADHYARLHLEASEARNKLWQARSTVRTLRPGTRFT 336

Query: 358 LT----GHYDHIGGADDQFALLRVVHQAHNNLNADLKAEAMRLLGE---------AALDE 404
           L     G      GA  Q+A+L V+    NNL  D       L G          AA +E
Sbjct: 337 LADGPLGLSAAQDGAPRQYAVLSVMSVGVNNLPKDAAEGLAELFGPIPPLLEDCVAACEE 396

Query: 405 GAAAGSLLDAALQP-------------ARGDARPV-YRNRFEAIRNKIPYRPLLTDAEGK 450
           G    SLL     P                 AR + Y N FEAIR  + +RP+L D  G 
Sbjct: 397 GQ---SLLHGQSGPDSLQLLGQTDIAGVIAQARQLGYANAFEAIRADVIWRPVLADGTGL 453

Query: 451 RLHPKPVASGQQTAVVVGAQGQA-------VHTDRDNRIRVQFHWQRGERSHSGLSSPAP 503
           RLH +  A G Q+A+VVG QG+        +H DR  R+R++FHWQ              
Sbjct: 454 RLHARATARGSQSAIVVGPQGETSASSAGEIHCDRLGRVRIRFHWQ-------------- 499

Query: 504 EGHVGAPANEQSGTWVRVLAGIAPTAGANWGGQAVPRVGQEVLIDFIEGDIDRPVVIGTL 563
               G   +  +  WVRV A  A + GA  G Q +PR+GQEVL+ FIE DIDRPV++G L
Sbjct: 500 ----GRNNDAAATCWVRV-AQRAASGGA--GMQFLPRIGQEVLVQFIEDDIDRPVIVGAL 552

Query: 564 YNGRGQ---------DNAQGNQ---------------AGQGAGAATGNAPAWFPG--DTD 597
           YNGRG+         D AQ                  +GQG   A GNAP W  G  D+D
Sbjct: 553 YNGRGEGAAAPTPGGDTAQAGSDDPARAFTSATDLQASGQG-NLAGGNAPTWHGGSQDSD 611

Query: 598 GHQHAAVLSGIKTQALGASQSGSGAYNQLVFDDTPGQSRASLQQHADGHDGASELNVGLL 657
           GH + A   GI+++  G    GSG YNQ+VFDDT  Q R  L+    G    SELN+G L
Sbjct: 612 GHGNTAAQWGIRSKEFG----GSG-YNQIVFDDTDAQGRIQLKTTQSG----SELNLGHL 662

Query: 658 RQQTDNQRLAATGQGFELKTRYSAAVRGGQGLLLSTEK------SSGAQLDVRGALSQLV 711
               DN R +  G G EL+T    A+R G G+L S+ K      S     D  G ++ L 
Sbjct: 663 IHTADNYRGSFRGTGAELRTDAYGALRAGGGILFSSYKIEQNAASRDPAGDNVGGMALLK 722

Query: 712 DSVDKQKQLAETAQKHN----AKFEGETEAGKLPAVESLA--ESVEVLKASATASSGNGS 765
            +    K   E    H     A   G T+A      +S A  E++ V  +     S   S
Sbjct: 723 QAALLGKTFNEATLTHKTVGLASHLGPTQASASTINDSAAPLEAIRVAASGMVDGSPENS 782

Query: 766 GGEGSEAST-TGATAF---SAPQLQLSSPAGIAAATPASAILAAGVTSSVTAGKDINQIA 821
           G + + A+T TG +     +A  + +++  G+ A       LA G T ++ +G D  Q+A
Sbjct: 783 GADVAAANTQTGESKLPHSTAALIGIAAKEGLGAVAGQHMQLANGETVNLLSGADSQQVA 842

Query: 822 QGNLHHLAKAGISLFTYGKVGDASKPVQDAGMALHAASGKVNVQSQAGKTLMTAAKQVTV 881
            GN + L ++G +L         +      G+ + AA   ++VQ+QA    + A  QV V
Sbjct: 843 -GNQYRL-RSGQALGVLAGA--MAAGEGGTGLQMIAAQKNIDVQAQADGLTVQARDQVRV 898

Query: 882 ASVGQHLR-VAAKQHVMFTAQGAWMKIEGGNIEIHGPGAMEFKASVKELTGPVDGAGELP 940
            S    +   AAK+  + TA GA + IEGGNI +  PG +   A+ K   GPV     LP
Sbjct: 899 ISANAGVDWAAAKKITLSTAGGANITIEGGNITVQCPGKLTIHAAQKLFAGPVSKTLPLP 958

Query: 941 RMPEA 945
           +MP +
Sbjct: 959 QMPNS 963


>gi|300310274|ref|YP_003774366.1| VGR-related protein
           [Herbaspirillum seropedicae SmR1]
          Length = 928

 Score =  348 bits (894), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 311/991 (31%), Positives = 460/991 (46%), Gaps = 157/991 (15%)

Query: 2   IASAIAALAGAW-NQSTRVMRLYMAAGAELGAETLMAEKLQAVEQISAFQDERGAMDGKV 60
           + + ++ALA  +  Q  R+++L     + LG + L+ +++   E++              
Sbjct: 16  VLTTLSALADTFVGQEKRILKL----DSVLGPDVLLPQRMVGSERLGR------------ 59

Query: 61  DIAGYRLQLSCLSLNAGISLRKLLGQPVLVELDTDGVPRA-FHGHVTDCRMEGANGGMAR 119
              GY   +  +S    I L+KL+ QPV + L  DG   A  HG+V   R  G++G +A 
Sbjct: 60  ---GYDYTIDLVSTRDDIELKKLIAQPVTLWLQQDGSDYAPLHGYVHTARRLGSDGQLAS 116

Query: 120 YVLTIEPWLAFLQHRRDSAVFQDMTVPDIIESVFRDYQGQGKLQPAWRLDLQDVSVYPRR 179
           + + + PWL FL++R+D+ ++QD    DI+  VF  +      +  +R ++  V+    R
Sbjct: 117 FQIGMAPWLHFLKYRKDARIWQDSKADDILADVFDQH---AYARGNYRFEI--VTPALPR 171

Query: 180 SLATQYQETDLAFVERLLAEEGLFYYIEHTGDPSSASLGTHTVVIADHNGSFKPNARDRI 239
           S  TQY ETD  FV+RL+ EEG + Y E   D S      H +VI D+    KP A +++
Sbjct: 172 SYCTQY-ETDWHFVQRLMEEEGWYAYHEQKPDGSG-----HVLVITDNTDQAKPLAPEQL 225

Query: 240 AFSQPGAVMSQDSIDR---WRSVRRWQSNAVEILTWDYRQAAVREASSMSSTGGDDAHGS 296
           AF   G   +QD ++R   W + R   S  +   T DY+    ++ +       +     
Sbjct: 226 AFHGAG---TQDEVNRILHWSASRGLASTRLATRTDDYKSPGDQKQTQ------ERVLPE 276

Query: 297 QGETPGGLVLTLRDAPGVYANENRAQAERQARNQMQAIEARNEIFTGTGTVRSLRPATSF 356
            G  PG L +     P  YA ++    +RQAR +++  E+  + F G    R+L     F
Sbjct: 277 HGALPGELEVYEYSGPYSYAKQD--DGDRQARLRVEQWESSMKRFMGVSGARTLAAGRWF 334

Query: 357 TLTGHYDHIGGA--DDQFALLRVVHQAHNNLNADLKAEAMRLLGEAALDEGAAAGSLLDA 414
           TLT H  H G +  D QF L+ V     NNL     A       +  LD   A+   +  
Sbjct: 335 TLTDHPAHRGDSKQDSQFMLIAVEWFIENNLPLSGTARDFPGSLKPQLDAFKAS---MGR 391

Query: 415 ALQPARGDARPVYR-NRFEAIRNKIPYRPLLTDAEGKRLHPKPVASGQQTAVVVGAQGQA 473
           +   A G+AR  +  NRFE  R K+PYR           H KPV    QTAVVVG QG+ 
Sbjct: 392 SNDDAGGNARTGHCFNRFEVQRRKLPYRSPFD-------HTKPVMH-PQTAVVVGPQGEE 443

Query: 474 VHTDRDNRIRVQFHWQRGERSHSGLSSPAPEGHVGAPANEQSGTWVRVLAGIAPTAGANW 533
           V TD+ NR++VQF W R                   P +E++  WVRV     P AG NW
Sbjct: 444 VFTDKLNRVKVQFRWDRIN-----------------PGDEKASCWVRV---SYPNAGENW 483

Query: 534 GGQAVPRVGQEVLIDFIEGDIDRPVVIGTLYNGRGQDNAQGNQAGQGAGAATGNAPAWFP 593
           G   VPRVGQE++I F+ GD DRPV  G L+N                       P W  
Sbjct: 484 GEVKVPRVGQELIISFLNGDPDRPVATGRLFNQE-------------------QPPQWH- 523

Query: 594 GDTDGHQHAAVLSGIKTQALGASQSGSGAYNQLVFDDTPGQSRASLQQHADGHDGASELN 653
             TDG      LSG+K++  G    G+G +NQLV DDT  Q+R     H       ++LN
Sbjct: 524 --TDGR-----LSGLKSKEFG----GNG-FNQLVMDDTTSQNRV----HLYSSQSNAQLN 567

Query: 654 VGLLRQQTDNQRLAATGQGFELKTRYSAAVRGGQGLLLST---EKSSGAQLDVRGALSQL 710
           +G L  Q DN+R    G GF L T    AV   +GL LS+       G QLD   A S +
Sbjct: 568 LGYLVSQADNERRNFYGSGFALSTDDYGAVVTQKGLYLSSYGRPGPQGTQLDASEATSLM 627

Query: 711 VDSVDKQKQLAETAQKHNAKFEGETEAGKLPAVESLAESVEVLKASATASSGNGSG-GEG 769
             S D  + L+++A +  A              E+LA+  + LK    A+    SG G+G
Sbjct: 628 KASADLARGLSDSASRAGA--------------EALAQ--DSLKDFVDATEDKYSGQGQG 671

Query: 770 SEASTTGATAFSAPQLQLSSPAGIAAATPASAILAAGVTSSVTAGKDINQIAQGNLHHLA 829
           S      A  F  P L +++PAGI  AT     + +   +++T+GKD +  +  +L    
Sbjct: 672 S------ANRFKKPLLMMAAPAGIGLATDQGTQVHSAQETTLTSGKDTSIASGKSLLATV 725

Query: 830 KAGISLFTYGKVGDASKPVQDAGMALHAASGKVNVQSQAGKTLMTAAKQVTVASVGQHLR 889
           K  ISLF            Q+AGM L AA GKV +Q+Q+    + A K   + S    + 
Sbjct: 726 KEKISLF-----------AQNAGMKLFAAKGKVEIQAQSDDLDLIAEKVARLLSTSGRVE 774

Query: 890 VAAKQHVMFTAQGAWMKIEGGNIEIHGPGAMEFKASVKELTGPVDGAGELPRM--PEAKP 947
           + AK  VM +A G++++I    I    PG  E KAS+  + GP      +P +   E +P
Sbjct: 775 IHAKDEVMISAGGSFIQINSAGITQGTPGKWEAKASLHSMPGPASQNFVMPHVQKSELQP 834

Query: 948 AYHEAFRVIDKETGEPVSYTPYRIENAKGEV 978
           +  E FR +  + GEP++   Y+   + G V
Sbjct: 835 SDME-FRHL-TDWGEPLAGAAYKAILSDGSV 863


>gi|300313606|ref|YP_003777698.1| VGR-related type VI secretion
           system protein [Herbaspirillum seropedicae SmR1]
          Length = 886

 Score =  311 bits (798), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 292/990 (29%), Positives = 434/990 (43%), Gaps = 166/990 (16%)

Query: 21  RLYMAAGAELGAETLMAEKLQAVEQISAFQDERGAMDGKVDIAGYRLQLSCLSLNAGISL 80
           R  +   + LG + L+ ++L A E+++                GY + +  L+ + GI+L
Sbjct: 20  RRLLQLDSSLGPDILLPQRLVATERLND---------------GYEVTIDLLATHTGIAL 64

Query: 81  RKLLGQPVLVEL---DTDGVPRAFHGHVTDCRMEGANGGMARYVLTIEPWLAFLQHRRDS 137
            +L+ QPV + +   D D +P   HG+V   +  G++G +    L++ PWL FL+ R+D+
Sbjct: 65  EQLIAQPVTLWIRQHDGDTLP--LHGYVHTAKRLGSDGELDFCQLSLSPWLHFLRFRKDA 122

Query: 138 AVFQDMTVPDIIESVFRDY-QGQGKLQPAWRLDLQDVSVYPRRSLATQYQETDLAFVERL 196
            ++QD    DI+  VF ++ Q +G     +R  L+    Y  R   TQY ETD  FV+RL
Sbjct: 123 RIWQDKRTEDILADVFNNHPQARGH----YRFQLE--RPYTPRPYCTQY-ETDWHFVQRL 175

Query: 197 LAEEGLFYYIEHTGDPSSASLGTHTVVIADHNGSFKPNARDRIAFSQPGAVMSQDSIDRW 256
           + EEG F + E   D S      H +VI D+  +     +  IAF         D I  W
Sbjct: 176 MEEEGWFAHHEQREDGSG-----HVLVITDNTWNLPGLPQQGIAFHGAAPRDELDKILHW 230

Query: 257 RSVRRWQSNAVEILTWDYRQAAVREASSMSSTGGDDAHGSQGETPGGLVLTLRDAPGVYA 316
            + R   S      + DY+      +  M     +      G+ P  L   + +  G Y+
Sbjct: 231 SASRTLSSKGWRGRSDDYK------SPGMKKEAEEQVMPEYGQLPAQL--EMYEYTGAYS 282

Query: 317 NENRAQAERQARNQMQAIEARNEIFTGTGTVRSLRPATSFTLTGHYDHIGGADD--QFAL 374
              + Q  RQA  Q++  E+  + ++    VR+L     F L  H  H    D   QF +
Sbjct: 283 FRLQEQGNRQADLQVEQWESSMQRYSAVSGVRNLACGRWFRLEEHPQHRAEPDRERQFVI 342

Query: 375 LRVVHQAHNNLNADLKAEAMRLLGEAALD-EGAAAGSLLDAALQPARGDARPVYR----- 428
           L +     NNL           L   ALD  G+  G+L+  A + +    R V       
Sbjct: 343 LAIDWFVENNLP----------LSHQALDFPGSLKGALM--AFKESIRRERQVAETDNEH 390

Query: 429 -----NRFEAIRNKIPYRPLLTDAEGKRLHPKPVASGQQTAVVVGAQGQAVHTDRDNRIR 483
                NRFE  R K+P+RP        R H +PV    QTA+VVG   + V+TD  +RI+
Sbjct: 391 TGHCFNRFEVQRRKLPFRP-------ARAHARPVML-PQTAIVVGPASEEVYTDHLDRIK 442

Query: 484 VQFHWQRGERSHSGLSSPAPEGHVGAPANEQSGTWVRVLAGIAPTAGANWGGQAVPRVGQ 543
           VQF W R                   P NE +  WVRV     P AG  WG   VPR+GQ
Sbjct: 443 VQFRWDRIN-----------------PGNEAASCWVRV---SYPNAGQYWGAIQVPRIGQ 482

Query: 544 EVLIDFIEGDIDRPVVIGTLYNGRGQDNAQGNQAGQGAGAATGNAPAWFPGDTDGHQHAA 603
           EV++ F+ GD DRPVV G L+N   +                   P W    T+G     
Sbjct: 483 EVIVSFLNGDPDRPVVTGRLFNAEQR-------------------PQW---HTNGR---- 516

Query: 604 VLSGIKTQALGASQSGSGAYNQLVFDDTPGQSRASLQQHADGHDGASELNVGLLRQQTDN 663
            LSG+K++  G    G+G +NQ+V DDTP Q+R     H    +  ++LN+G L  QT N
Sbjct: 517 -LSGVKSKEFG----GTG-FNQMVMDDTPEQNRI----HLYSTNTHAQLNLGHLVSQTGN 566

Query: 664 QRLAATGQGFELKTRYSAAVRGGQGLLLSTEKSSGA---QLDVRGALSQLVDSVDKQKQL 720
           +R +  G GF L T    A+   +GL +ST    GA   QLD R A  QL    +  + L
Sbjct: 567 ERRSFFGSGFALSTDAYGAIVTHKGLYISTYGRPGAQGTQLDAREATGQLKSGANLSRTL 626

Query: 721 AETAQKHNAKFEGETEAGKLPAVESLAESVEVLKASATASSGNGSGGEGSEASTTGATAF 780
           +ETA K  A    E  AG+    E+L + ++  +A            +  + S   A  F
Sbjct: 627 SETAAKAGA----EPLAGQ----EALRDFIDATQA------------DYEDPSQAQANRF 666

Query: 781 SAPQLQLSSPAGIAAATPASAILAAGVTSSVTAGKDINQIAQGNLHHLAKAGISLFTYGK 840
               L  +SP GI   TP      AG   ++++G D +     +L       ISLF +  
Sbjct: 667 QQAILLAASPDGIGLTTPKGVHTHAGGEITLSSGADTSIAVGKSLLASVAEKISLFAF-- 724

Query: 841 VGDASKPVQDAGMALHAASGKVNVQSQAGKTLMTAAKQVTVASVGQHLRVAAKQHVMFTA 900
                     AG+ L +A GKV VQ+Q+    + A K   + S    + + AK+ V+ TA
Sbjct: 725 ---------KAGIKLFSAKGKVEVQAQSDDLELIAEKVARLLSASGRVEIRAKEEVLITA 775

Query: 901 QGAWMKIEGGNIEIHGPGAMEFKASVKELTGPVDGAGELPRMPEAKPAYHEAFRVIDKET 960
            G+++++    I     GA E KA    + GP   A E+ +   A P + E F +     
Sbjct: 776 GGSFIRLNASGITQGTSGAWEAKAGTHAMPGPTTLAYEMNKSSAALP-FDEEFVLRWPYD 834

Query: 961 GEPVSYTPYRIENAKGEVIASGITDEAGNT 990
             PV    + I    G  +  G+TD  G T
Sbjct: 835 QSPVKNRRFEIVRGDGTKV-RGVTDAQGKT 863


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.130    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,945,216
Number of extensions: 124296
Number of successful extensions: 433
Number of sequences better than 1.0e-08: 9
Number of HSP's gapped: 350
Number of HSP's successfully gapped: 10
Length of query: 1009
Length of database: 1,619,870
Length adjustment: 95
Effective length of query: 914
Effective length of database: 1,170,045
Effective search space: 1069421130
Effective search space used: 1069421130
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 135 (56.6 bits)