BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0024.0056.p (891 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310082|ref|YP_003774174.1| ClpA/B-type chaperone protein [... 1559 0.0 gi|300313318|ref|YP_003777410.1| ClpA/B-type chaperone ATPase [H... 1526 0.0 gi|300311426|ref|YP_003775518.1| ATP-dependent Clp protease subu... 526 e-150 gi|300310731|ref|YP_003774823.1| ATP-dependent protease ATP-bind... 270 3e-73 >gi|300310082|ref|YP_003774174.1| ClpA/B-type chaperone protein [Herbaspirillum seropedicae SmR1] Length = 893 Score = 1559 bits (4036), Expect = 0.0, Method: Compositional matrix adjust. Identities = 796/895 (88%), Positives = 833/895 (93%), Gaps = 6/895 (0%) Query: 1 MGINLKSLISKLNESARLATERAATLCMSRGQYEVDLEHLFLALLEQPQSDFCLIARRSG 60 MGINLKSLISKLN+S+RLATERAA+LCM+RGQYEVDLEHLFLALLE PQ+DF LI RRSG Sbjct: 1 MGINLKSLISKLNDSSRLATERAASLCMARGQYEVDLEHLFLALLENPQTDFSLIVRRSG 60 Query: 61 ISLDSLQADLEREIGTFKNGNTRTPVLSPHLQTLFEHGWLIASLDSGNPAIRSGHLLLAL 120 IS DSLQADLE EI FKNGNTRTPVLS HLQTLFEHGWLIASLD P+IRSGHLLLAL Sbjct: 61 ISPDSLQADLEHEISQFKNGNTRTPVLSSHLQTLFEHGWLIASLDGERPSIRSGHLLLAL 120 Query: 121 LTQSELSQLAYRGSKLFAKFKVDELKHDLHKLTEGSVEAPAMSEAGGKPGEEDSA----G 176 LTQ+EL+QLAYRGSKLFA+FKVDELKHDL KLTEGSVEAPA++ A + A G Sbjct: 121 LTQTELAQLAYRGSKLFARFKVDELKHDLAKLTEGSVEAPALASASASAAADGQADEQQG 180 Query: 177 GDPVGELQQRAASKTPALDQYTTQLTQRARDGKIDPVIGRDAEIRQAVDILLRRRQNNPI 236 GDPVGE+ RA +TPALDQYTT LTQRAR+GKIDPV+GRD EIRQAVDILLRRRQNNPI Sbjct: 181 GDPVGEM--RAGGRTPALDQYTTNLTQRAREGKIDPVVGRDGEIRQAVDILLRRRQNNPI 238 Query: 237 LTGEAGVGKTAVVEGLALRIAQGDVPQPLQGVEIHTLDMGLLQAGASVKGEFENRLKNVI 296 LTGEAGVGKTAVVEGLALRIAQ DVPQ LQGVEIHTLDMGLLQAGASVKGEFENRLK VI Sbjct: 239 LTGEAGVGKTAVVEGLALRIAQDDVPQALQGVEIHTLDMGLLQAGASVKGEFENRLKGVI 298 Query: 297 DEVKKSPHPIILFIDEAHTMIGAGGQAGQNDAANLLKPALARGELRTIAATTWSEYKKYF 356 DEVKKSPHPIILFIDEAHTMIGAGGQAGQNDAANLLKPALARGELRTIAATTWSEYKKYF Sbjct: 299 DEVKKSPHPIILFIDEAHTMIGAGGQAGQNDAANLLKPALARGELRTIAATTWSEYKKYF 358 Query: 357 EKDAALARRFQVIKVEEPTEEVACAMLRAMAPLMEKHFGVRVYDEAITEAVRLSHRYISG 416 EKDAALARRFQVIKVEEPTEEVACAMLRAMAPLMEKHFGVRVYDEAITEAVRLSHRYISG Sbjct: 359 EKDAALARRFQVIKVEEPTEEVACAMLRAMAPLMEKHFGVRVYDEAITEAVRLSHRYISG 418 Query: 417 RQLPDKAISVLDTACAKVALGQNATPALLEGVTRRIERLDAEIGALRRESASGSEHQARL 476 RQLPDKAISVLDTACAKVALGQNATPA LEGVTRR+ERL AEI AL RE+ SG+ H RL Sbjct: 419 RQLPDKAISVLDTACAKVALGQNATPARLEGVTRRLERLAAEIAALERETRSGASHATRL 478 Query: 477 AELQAQHAAALAEQADLQTRWEQERGLNERIQQARAALEDANKEGSNTGDADAARAELKQ 536 ELQAQHA A+AEQ +LQ RWEQER LN RIQ ARAALE+AN+E +++ D+ AAR+EL+Q Sbjct: 479 GELQAQHAQAIAEQTELQQRWEQERELNGRIQAARAALEEANQESASSQDSAAARSELQQ 538 Query: 537 LLDELTQHQGETPMVPVQVDGHVVAEIVAGWTGIPLGKMVKDEIKTVLGLDALLRERVLG 596 LL +L +HQGETPMVPVQVDGHVVAEIVAGWTGIPLGKMVKDEIKTVLGLDALL+ERVLG Sbjct: 539 LLAQLKEHQGETPMVPVQVDGHVVAEIVAGWTGIPLGKMVKDEIKTVLGLDALLKERVLG 598 Query: 597 QPQATSAVAQRVRTSRANLDDPGKPKGVFLFVGPSGVGKTETALALADVLYGGERKLITI 656 QPQAT+AVAQRVRTSRANLDDPGKPKGVFLFVGPSGVGKTETALALADVLYGGERKLITI Sbjct: 599 QPQATAAVAQRVRTSRANLDDPGKPKGVFLFVGPSGVGKTETALALADVLYGGERKLITI 658 Query: 657 NMSEYQEAHTVSGLKGSPPGYVGYGEGGVLTEAVRRNPYSVVLLDEVEKAHPDVLELFFQ 716 NMSEYQEAHTVSGLKGSPPGYVGYGEGGVLTEAVRRNPYSVVLLDEVEKAHPDVLELFFQ Sbjct: 659 NMSEYQEAHTVSGLKGSPPGYVGYGEGGVLTEAVRRNPYSVVLLDEVEKAHPDVLELFFQ 718 Query: 717 VFDKGVMDDGEGREIDFKNTIIILTSNVASSQMMQACLNKTAEELPTPDELDALIRPQLV 776 VFDKGVMDDGEGREIDFKNTIIILTSNVASSQ+MQACLNK+A ELPTPDELD LIRPQLV Sbjct: 719 VFDKGVMDDGEGREIDFKNTIIILTSNVASSQLMQACLNKSAAELPTPDELDVLIRPQLV 778 Query: 777 KAFKPAFLGRLKVIPYYPIADEVLVEIIHLKLARIAKRIAGNHKAEFSYDKALVEAVLAR 836 KAFKPAFLGRLKVIPYYPI+DEVL +II LKL RIA RIA NHKAEFSYDKALVEAVLAR Sbjct: 779 KAFKPAFLGRLKVIPYYPISDEVLEQIIKLKLGRIANRIAENHKAEFSYDKALVEAVLAR 838 Query: 837 CTEVDSGARNVDNILNGSLLPEIAESVLARMAEGQGISRIKVSASKKGDFKYTIQ 891 CTEVDSGARNVDNILNGSLLPEIAESVLARMAEGQGISRIKVSA KKGDFKYTIQ Sbjct: 839 CTEVDSGARNVDNILNGSLLPEIAESVLARMAEGQGISRIKVSAGKKGDFKYTIQ 893 >gi|300313318|ref|YP_003777410.1| ClpA/B-type chaperone ATPase [Herbaspirillum seropedicae SmR1] Length = 889 Score = 1526 bits (3950), Expect = 0.0, Method: Compositional matrix adjust. Identities = 762/891 (85%), Positives = 815/891 (91%), Gaps = 2/891 (0%) Query: 1 MGINLKSLISKLNESARLATERAATLCMSRGQYEVDLEHLFLALLEQPQSDFCLIARRSG 60 MGINL+SLI KLNE+ARLATERAATLC+S YEVDLEHLFLALLEQPQSDF LIARRSG Sbjct: 1 MGINLRSLICKLNETARLATERAATLCVSCSHYEVDLEHLFLALLEQPQSDFSLIARRSG 60 Query: 61 ISLDSLQADLEREIGTFKNGNTRTPVLSPHLQTLFEHGWLIASLDSGNPAIRSGHLLLAL 120 I D LQADLE EI TF+ GN RTPVLSPHL+TLFE+GWLIASL+ NP++RS HLLLAL Sbjct: 61 IDTDGLQADLEHEISTFREGNARTPVLSPHLRTLFENGWLIASLEESNPSVRSAHLLLAL 120 Query: 121 LTQSELSQLAYRGSKLFAKFKVDELKHDLHKLTEGSVEAPAMSEAGGKPGEEDSAGGDPV 180 LTQS+LSQLAYRGSKLFAKFK+DE+KH+LH+LTEGSVE+ A+ + G G + +GGDP+ Sbjct: 121 LTQSDLSQLAYRGSKLFAKFKIDEIKHNLHRLTEGSVESAAIGKTG--QGGDRESGGDPM 178 Query: 181 GELQQRAASKTPALDQYTTQLTQRARDGKIDPVIGRDAEIRQAVDILLRRRQNNPILTGE 240 GEL+Q K ALDQYTTQLTQRARDGKIDPVIGRDAEIRQAVDILLRRRQNNPILTGE Sbjct: 179 GELKQLRIGKMTALDQYTTQLTQRARDGKIDPVIGRDAEIRQAVDILLRRRQNNPILTGE 238 Query: 241 AGVGKTAVVEGLALRIAQGDVPQPLQGVEIHTLDMGLLQAGASVKGEFENRLKNVIDEVK 300 AGVGKTAVVEGLALRIAQGDVP+PLQGVEIHTLDMGLLQAGASVKGEFE+RLK VIDEVK Sbjct: 239 AGVGKTAVVEGLALRIAQGDVPKPLQGVEIHTLDMGLLQAGASVKGEFESRLKTVIDEVK 298 Query: 301 KSPHPIILFIDEAHTMIGAGGQAGQNDAANLLKPALARGELRTIAATTWSEYKKYFEKDA 360 KS +PIILFIDEAHTMIGA GQAGQ+DAANLLKPALARGELRTIAATTWSEYKKYFEKDA Sbjct: 299 KSAYPIILFIDEAHTMIGAAGQAGQSDAANLLKPALARGELRTIAATTWSEYKKYFEKDA 358 Query: 361 ALARRFQVIKVEEPTEEVACAMLRAMAPLMEKHFGVRVYDEAITEAVRLSHRYISGRQLP 420 ALARRFQVIKVEEP E+VACAMLRAM PLME+HFGVRVYDEA+ EAVRLSHRYISGRQLP Sbjct: 359 ALARRFQVIKVEEPGEDVACAMLRAMVPLMEQHFGVRVYDEAVVEAVRLSHRYISGRQLP 418 Query: 421 DKAISVLDTACAKVALGQNATPALLEGVTRRIERLDAEIGALRRESASGSEHQARLAELQ 480 DKAISVLDTACAKVALG++ATPALLEGVTRR+ERLD EI ALRRE+ASGS+H+ RLA L Sbjct: 419 DKAISVLDTACAKVALGRDATPALLEGVTRRLERLDTEISALRREAASGSQHEERLASLL 478 Query: 481 AQHAAALAEQADLQTRWEQERGLNERIQQARAALEDANKEGSNTGDADAARAELKQLLDE 540 QH A+AE+ DLQ RWEQER LNERIQQARA LE+ + G+ DAARAELKQLLDE Sbjct: 479 DQHVCAVAERHDLQLRWEQERELNERIQQARATLENPGTGDARGGNVDAARAELKQLLDE 538 Query: 541 LTQHQGETPMVPVQVDGHVVAEIVAGWTGIPLGKMVKDEIKTVLGLDALLRERVLGQPQA 600 L Q QG+ PMVP+QVDGHVVAEIVA WTGIPLGKMVKDEI+TVL LDALL+ERVLGQPQA Sbjct: 539 LRQRQGDAPMVPIQVDGHVVAEIVAAWTGIPLGKMVKDEIQTVLDLDALLQERVLGQPQA 598 Query: 601 TSAVAQRVRTSRANLDDPGKPKGVFLFVGPSGVGKTETALALADVLYGGERKLITINMSE 660 TSAVAQRVRTSRANLDDPGKPKGVFLFVGPSGVGKTETALALADVLYGGERKLITINMSE Sbjct: 599 TSAVAQRVRTSRANLDDPGKPKGVFLFVGPSGVGKTETALALADVLYGGERKLITINMSE 658 Query: 661 YQEAHTVSGLKGSPPGYVGYGEGGVLTEAVRRNPYSVVLLDEVEKAHPDVLELFFQVFDK 720 YQEAHTVSGLKGSPPGYVGYGEGGVLTEAVRRNPYSVVLLDEVEKAH DVLELFFQVFDK Sbjct: 659 YQEAHTVSGLKGSPPGYVGYGEGGVLTEAVRRNPYSVVLLDEVEKAHADVLELFFQVFDK 718 Query: 721 GVMDDGEGREIDFKNTIIILTSNVASSQMMQACLNKTAEELPTPDELDALIRPQLVKAFK 780 GVMDD EGREIDFKNTIIILTSNVAS+QMMQACLNK+ EELPTP+ELD LIRPQL+K FK Sbjct: 719 GVMDDAEGREIDFKNTIIILTSNVASAQMMQACLNKSQEELPTPEELDTLIRPQLIKTFK 778 Query: 781 PAFLGRLKVIPYYPIADEVLVEIIHLKLARIAKRIAGNHKAEFSYDKALVEAVLARCTEV 840 PAFLGRLKV+PYYPIAD VLVEII LKLARIAKR+A NH+ EFSYDKALVEAVL RCTEV Sbjct: 779 PAFLGRLKVVPYYPIADVVLVEIIKLKLARIAKRVAENHRVEFSYDKALVEAVLGRCTEV 838 Query: 841 DSGARNVDNILNGSLLPEIAESVLARMAEGQGISRIKVSASKKGDFKYTIQ 891 DSGARNVDNIL+G+LLP +AESVL RMAEG I RIKVSASKKGDFKYTIQ Sbjct: 839 DSGARNVDNILSGTLLPAVAESVLVRMAEGVEIRRIKVSASKKGDFKYTIQ 889 >gi|300311426|ref|YP_003775518.1| ATP-dependent Clp protease subunit [Herbaspirillum seropedicae SmR1] Length = 861 Score = 526 bits (1355), Expect = e-150, Method: Compositional matrix adjust. Identities = 330/832 (39%), Positives = 477/832 (57%), Gaps = 59/832 (7%) Query: 3 INLKSLISKLNESARLATERAATLCMSRGQYEVDLEHLFLALLEQPQSDFCLIARRSGIS 62 + L L +KL E+ A +A QY ++ HL LALL Q + +R+G++ Sbjct: 1 MRLDKLTTKLQEALADAQSQAVG---HDNQY-IEPVHLILALLNQEDGGARSLLQRAGVN 56 Query: 63 LDSLQADLEREIGTFKNGNTRTPVLSPHLQTLFEHGWLIASLD-SGNPAIRSGHLLLALL 121 ++ L A L+ + R P +S + + L+A L+ + A + G +A Sbjct: 57 VNGLSAALQAAV-------KRLPQVSGNGGEVQVGRELVALLNLADKEAQKHGDQFVA-- 107 Query: 122 TQSELSQLAYRGSKLFAKFKVDELKHDLHKLTEGSVEAPAMSEAGGKPGEEDSAGGDPVG 181 SE+ L K A E + LT S+EA + GG Sbjct: 108 --SEMVLLGLVDDKSDAGRAARE-----NGLTRKSLEAAITAVRGGASVS---------- 150 Query: 182 ELQQRAASKTPALDQYTTQLTQRARDGKIDPVIGRDAEIRQAVDILLRRRQNNPILTGEA 241 Q+ + AL +YT LT+RAR GK+DPVIGRD EIR+A+ +L RR +NNP+L GE Sbjct: 151 --SQQDEGQREALKKYTLDLTERARAGKLDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEP 208 Query: 242 GVGKTAVVEGLALRIAQGDVPQPLQGVEIHTLDMGLLQAGASVKGEFENRLKNVIDEVKK 301 GVGKTA+VEGLA RI G+VP L+ + +LDM L AGA +GEFE RLK V+ E+ + Sbjct: 209 GVGKTAIVEGLAQRIVNGEVPDSLKSKRVLSLDMAALLAGAKYRGEFEERLKAVLKEIAQ 268 Query: 302 SPHPIILFIDEAHTMIGAGGQAGQNDAANLLKPALARGELRTIAATTWSEYKKYFEKDAA 361 I+FIDE HTM+GAG G DA N+LKPALARGEL + ATT EY++Y EKDAA Sbjct: 269 DEGQTIVFIDELHTMVGAGKAEGAMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAA 328 Query: 362 LARRFQVIKVEEPTEEVACAMLRAMAPLMEKHFGVRVYDEAITEAVRLSHRYISGRQLPD 421 L RRFQ I V+EP+ E A+LR + E H GV + D AI A LSHRYI+ R LPD Sbjct: 329 LERRFQKILVDEPSVEATIAILRGLQEKYEVHHGVDITDPAIVAAAELSHRYITDRFLPD 388 Query: 422 KAISVLDTACAKVALGQNATPALLEGVTRRIERLDAEIGALRRESASGSEHQARLAELQA 481 KAI ++D A +K+ + ++ P +++ + RR+ +L E A++RE S Q RL ++ Sbjct: 389 KAIDLIDEAASKIKIEIDSKPEVMDKLDRRLIQLKIEREAVKREKDEAS--QKRLQLIEE 446 Query: 482 QHAAALAEQADLQTRWEQERG-------LNERIQQARAALEDANKEGSNTGDADAARAEL 534 + E ADL+ W+ E+ L E I++ R +E+A ++ ++ +L Sbjct: 447 EIEKLEREYADLEEIWKAEKSSAQGGQQLKEEIEKVRLQMEEATRKSDWQKVSELKYGKL 506 Query: 535 KQLLDELTQH--------QGETP-MVPVQVDGHVVAEIVAGWTGIPLGKMVKDEIKTVLG 585 +L L + E P +V QV +AEIVA TGIP+ +M++ E + +L Sbjct: 507 AELEAALEVQNKKDAAGVKTEKPKLVRTQVGAEEIAEIVARATGIPVSRMMQGEREKLLH 566 Query: 586 LDALLRERVLGQPQATSAVAQRVRTSRANLDDPGKPKGVFLFVGPSGVGKTETALALADV 645 ++ +L ERV+GQ +A AV+ +R SRA L DP KP G F+F+GP+GVGKTE ALA Sbjct: 567 MEDVLHERVVGQDEAIVAVSDAIRRSRAGLGDPSKPYGSFMFLGPTGVGKTELCKALASY 626 Query: 646 LYGGERKLITINMSEYQEAHTVSGLKGSPPGYVGYGEGGVLTEAVRRNPYSVVLLDEVEK 705 L+ E +I I+MSE+ E H+V+ L G+PPGYVGY EGG LTEAVRR PYSV+LLDE+EK Sbjct: 627 LFDTEEAMIRIDMSEFMEKHSVARLIGAPPGYVGYEEGGYLTEAVRRKPYSVILLDEIEK 686 Query: 706 AHPDVLELFFQVFDKGVMDDGEGREIDFKNTIIILTSNVASSQMMQACLNKTAEELPTPD 765 AHPDV + QV D G M DG+GR +DFKNT+I++TSN+ S ++ + E P Sbjct: 687 AHPDVFNVLLQVLDDGRMTDGQGRTVDFKNTVIVMTSNLGSHKIQ-------SMEDSDPA 739 Query: 766 ELDALIRPQLVKAFKPAFLGRL-KVIPYYPIADEVLVEIIHLKLARIAKRIA 816 + + ++ F+P F+ R+ +++ ++ + + + I ++L + +R+A Sbjct: 740 LVKLAVMAEVRTHFRPEFINRVDEIVVFHALDAKNIGAIAKIQLRILEQRLA 791 >gi|300310731|ref|YP_003774823.1| ATP-dependent protease ATP-binding specificity subunit [Herbaspirillum seropedicae SmR1] Length = 767 Score = 270 bits (691), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 164/418 (39%), Positives = 241/418 (57%), Gaps = 41/418 (9%) Query: 29 SRGQYEVDLEHLFLALLEQPQSDFCLIARRSGISLDSLQADLEREIGTFKNGNTRT---- 84 SR ++ + +EHL LALL+ P + + R +++D DL + + F NT T Sbjct: 20 SRHEF-ITVEHLLLALLDNPSA--AEVLRACSVNID----DLRKTLTNFITDNTPTVPGT 72 Query: 85 ------PVLSPHLQTLFEHGWL-IASLDSGNPAIRSGHLLLALLTQSELSQLAYRGSKLF 137 P L Q + + + + S +G + ++L+A+ + + + Y + Sbjct: 73 NEVDTQPTLG--FQRVIQRAIMHVQSASNGKKEVTGANVLVAIFGEKDSHAVYYLHQQGV 130 Query: 138 AKFKV-DELKHDLHKLTEGSVE-APAMSEAGGKPGEEDSAGGDPVGELQQRAASKTPALD 195 + V + + H + K + + AP G ED +Q K LD Sbjct: 131 TRLDVVNFISHGVRKDQQADPQKAPE--------GAED---------VQAEGQQKESPLD 173 Query: 196 QYTTQLTQRARDGKIDPVIGRDAEIRQAVDILLRRRQNNPILTGEAGVGKTAVVEGLALR 255 Q+T L + A +GKIDP+IGR++E+ + + L RRR+NNP+L GEAGVGKTA+ EGLA R Sbjct: 174 QFTQNLNKAAAEGKIDPLIGRESEVERVIQTLCRRRKNNPLLVGEAGVGKTAIAEGLAWR 233 Query: 256 IAQGDVPQPLQGVEIHTLDMGLLQAGASVKGEFENRLKNVIDEVKKSPHPIILFIDEAHT 315 + QGDVP+ L+ +++LDMG L AG +G+FE RLK V+ ++K SP+ ILFIDE HT Sbjct: 234 VTQGDVPEILKNAVVYSLDMGALLAGTKYRGDFEQRLKAVLKQLKDSPNG-ILFIDEIHT 292 Query: 316 MIGAGGQAGQN-DAANLLKPALARGELRTIAATTWSEYKKYFEKDAALARRFQVIKVEEP 374 +IGAG +G DA+NLLKPAL+ G+L+ I ATT++E++ FEKD AL+RRFQ I V EP Sbjct: 293 IIGAGSASGGTLDASNLLKPALSSGQLKCIGATTYTEFRGVFEKDHALSRRFQKIDVNEP 352 Query: 375 TEEVACAMLRAMAPLMEKHFGVRVYDEAITEAVRLSHRYISGRQLPDKAISVLDTACA 432 T E +LR + E+H GV+ A+T A L+ R+I+ R LPDKAI V+D A A Sbjct: 353 TVEQTVQILRGLKSKFEEHHGVKYSASALTSAAELAARFINDRHLPDKAIDVIDEAGA 410 Score = 184 bits (467), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 108/306 (35%), Positives = 176/306 (57%), Gaps = 11/306 (3%) Query: 560 VAEIVAGWTGIPLGKMVKDEIKTVLGLDALLRERVLGQPQATSAVAQRVRTSRANLDDPG 619 + EI++ IP + +D+ + +D L+ V GQ A A++ ++ +RA L Sbjct: 429 IEEIISKIARIPPQSVNQDDRAKLQTIDRDLKNVVFGQDPAIEALSSAIKMARAGLGKTD 488 Query: 620 KPKGVFLFVGPSGVGKTETALALADVLYGGERKLITINMSEYQEAHTVSGLKGSPPGYVG 679 KP G FLF GP+GVGKTE A LA +L G E L+ +MSEY E H VS L G+PPGYVG Sbjct: 489 KPIGSFLFSGPTGVGKTEVAKQLAFIL-GIE--LVRFDMSEYMERHAVSRLIGAPPGYVG 545 Query: 680 YGEGGVLTEAVRRNPYSVVLLDEVEKAHPDVLELFFQVFDKGVMDDGEGREIDFKNTIII 739 + +GG+LTEAV + P++V+LLDE+EKAHPD+ + QV D G + D GR+ DF+N III Sbjct: 546 FDQGGLLTEAVNKKPHAVLLLDEIEKAHPDIFNILLQVMDHGTLTDNNGRKTDFRNVIII 605 Query: 740 LTSNVASSQMMQACLNKTAEELPTPDELDALIRPQLVKAFKPAFLGRLK-VIPYYPIADE 798 +T+N + + + + T E+ DE+ + R F P F RL +I + P+ +E Sbjct: 606 MTTNAGAESLQKRTIGFT-EKKEAGDEMADIKR-----MFTPEFRNRLDAIISFRPLDEE 659 Query: 799 VLVEIIHLKLARIAKRIAGNHKAEFSYDKALVEAVLARCTEVDSGARNVDNILNGSLLPE 858 +++ ++ L ++ +++ K E + +L + + + + GAR + ++ + Sbjct: 660 IILRVVDKFLMQLEEQLH-EKKVEAVFSDSLRKFLGKKGFDPLMGARPMSRLIQDLIRKA 718 Query: 859 IAESVL 864 +A+ +L Sbjct: 719 LADELL 724 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.316 0.133 0.371 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,551,622 Number of extensions: 105905 Number of successful extensions: 494 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 480 Number of HSP's successfully gapped: 5 Length of query: 891 Length of database: 1,619,870 Length adjustment: 94 Effective length of query: 797 Effective length of database: 1,174,780 Effective search space: 936299660 Effective search space used: 936299660 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 135 (56.6 bits)