BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0024.0055.p
         (362 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313319|ref|YP_003777411.1| hypothetical protein Hsero_4032...   614   e-177
gi|300310081|ref|YP_003774173.1| hypothetical protein Hsero_0746...   603   e-174

>gi|300313319|ref|YP_003777411.1| hypothetical protein Hsero_4032
           [Herbaspirillum seropedicae SmR1]
          Length = 362

 Score =  614 bits (1583), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 303/362 (83%), Positives = 330/362 (91%)

Query: 1   MQATQRRFEPSVIERLFAAPHRFQFFQAVRMIELWFKRNGVPHERAVSDFLRFANRTVLG 60
           MQATQRRFEPSVIERLFA PHRFQFFQAVRMIE WF+RNGVPHERAVSDF+RFANRTVLG
Sbjct: 1   MQATQRRFEPSVIERLFAVPHRFQFFQAVRMIECWFRRNGVPHERAVSDFVRFANRTVLG 60

Query: 61  FPASEIEGIETYPPREDETVSVADMEQALRSGQMKYVRLTPTFMGFLGGSGSLPAHYTER 120
           FPASEIE I+TYP RE E +SV +MEQALR GQMKYVR+TPTFMGFLG SGSLPAHYTER
Sbjct: 61  FPASEIEAIDTYPSREGEAISVDNMEQALRCGQMKYVRITPTFMGFLGSSGSLPAHYTER 120

Query: 121 IARHQIEQRDEGPRAFLDAFSTRSLALFYQAWSKYRLAFQYEAGRRDTFLPLLLSLSGLG 180
           +ARHQIE RDEGPRAFLDAFSTRSLALFY AW+KYRL F Y+ GRRDTFLPLLLSLSGLG
Sbjct: 121 VARHQIEHRDEGPRAFLDAFSTRSLALFYHAWNKYRLTFHYDVGRRDTFLPLLLSLSGLG 180

Query: 181 FRSLRERLQDIEGNGVRDESLAHFAGAFRHRPASAPYMQKVLGEYFSVPLQIEQFVGYWY 240
           F SLR+RLQD  GNGVRDESL +FAGA RHRP SA YMQKVLGEYFSVPLQIEQF+GYWY
Sbjct: 181 FHSLRQRLQDGTGNGVRDESLGYFAGALRHRPPSALYMQKVLGEYFSVPLQIEQFIGYWY 240

Query: 241 KVPREHQTMLGSTNSALGTAMAGERVWQRDLRMRLRIGPLAMKDFEQFLPGKKASLALAR 300
           KVPR+HQT+LGSTNS LG AM GERVWQRDLRMRLRIGP+A++DFE+FLPGK+ S+ALAR
Sbjct: 241 KVPRQHQTVLGSTNSVLGKAMVGERVWQRDLRMRLRIGPVAIRDFEKFLPGKEVSVALAR 300

Query: 301 MLGMFTGSTLEYEVQLVLRAQDVRGMALAGTNEGGRLGWDTFIATAPETRDRADIRYEIA 360
           MLGMF+GSTLEYEV++ L AQDVRGM L    EGGRLGWD+F+ATAPETRDRAD+RYEI+
Sbjct: 301 MLGMFSGSTLEYEVEVALLAQDVRGMTLGSMREGGRLGWDSFVATAPETRDRADLRYEIS 360

Query: 361 VQ 362
           VQ
Sbjct: 361 VQ 362


>gi|300310081|ref|YP_003774173.1| hypothetical protein Hsero_0746
           [Herbaspirillum seropedicae SmR1]
          Length = 360

 Score =  603 bits (1555), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 292/362 (80%), Positives = 321/362 (88%), Gaps = 2/362 (0%)

Query: 1   MQATQRRFEPSVIERLFAAPHRFQFFQAVRMIELWFKRNGVPHERAVSDFLRFANRTVLG 60
           MQATQRRFEPSVIERLFAAPHRFQFFQAVRMIELWFKRNGV  ERAV DFLRFANRT LG
Sbjct: 1   MQATQRRFEPSVIERLFAAPHRFQFFQAVRMIELWFKRNGVAPERAVCDFLRFANRTALG 60

Query: 61  FPASEIEGIETYPPREDETVSVADMEQALRSGQMKYVRLTPTFMGFLGGSGSLPAHYTER 120
           FPASEIE I+     +D   SVA M Q+LR G+MKYVRLTPTFMGFLGGSG+LPAHYTER
Sbjct: 61  FPASEIEAIDAVASSDD--TSVAGMAQSLREGKMKYVRLTPTFMGFLGGSGALPAHYTER 118

Query: 121 IARHQIEQRDEGPRAFLDAFSTRSLALFYQAWSKYRLAFQYEAGRRDTFLPLLLSLSGLG 180
           IARHQIE RDEGPRAFLD FSTRSLALFYQAWSKYRLAFQYE GRRD FLPLLLSLSG+G
Sbjct: 119 IARHQIEHRDEGPRAFLDVFSTRSLALFYQAWSKYRLAFQYEMGRRDKFLPLLLSLSGIG 178

Query: 181 FRSLRERLQDIEGNGVRDESLAHFAGAFRHRPASAPYMQKVLGEYFSVPLQIEQFVGYWY 240
           FRSLRERL +++G GVRDES+AHFA A  HRPASAPYMQ+VL EYFS+PL IEQFVG WY
Sbjct: 179 FRSLRERLLEVDGRGVRDESIAHFAAALSHRPASAPYMQQVLSEYFSIPLTIEQFVGQWY 238

Query: 241 KVPREHQTMLGSTNSALGTAMAGERVWQRDLRMRLRIGPLAMKDFEQFLPGKKASLALAR 300
            VPREHQTMLGSTNSALGTAMAG+RVWQRDLRMRLR+GPLA+ DFEQFLPG +AS AL+R
Sbjct: 239 DVPREHQTMLGSTNSALGTAMAGQRVWQRDLRMRLRLGPLALPDFEQFLPGARASQALSR 298

Query: 301 MLGMFTGSTLEYEVQLVLRAQDVRGMALAGTNEGGRLGWDTFIATAPETRDRADIRYEIA 360
           MLG+FTG TLEYE+QL+LRA+DVRG+ L+    GGRLGWD+F+ATAP+ +DRADI Y++A
Sbjct: 299 MLGVFTGPTLEYEIQLILRAEDVRGLGLSPDRTGGRLGWDSFVATAPQQQDRADICYQLA 358

Query: 361 VQ 362
           V 
Sbjct: 359 VH 360


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.138    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,106,729
Number of extensions: 45246
Number of successful extensions: 141
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 140
Number of HSP's successfully gapped: 2
Length of query: 362
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 276
Effective length of database: 1,212,660
Effective search space: 334694160
Effective search space used: 334694160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 131 (55.1 bits)