BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0024.0054.p (614 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313320|ref|YP_003777412.1| hypothetical protein Hsero_4033... 1150 0.0 gi|300310080|ref|YP_003774172.1| hypothetical protein Hsero_0745... 1104 0.0 >gi|300313320|ref|YP_003777412.1| hypothetical protein Hsero_4033 [Herbaspirillum seropedicae SmR1] Length = 614 Score = 1150 bits (2975), Expect = 0.0, Method: Compositional matrix adjust. Identities = 562/614 (91%), Positives = 582/614 (94%) Query: 1 VQELLPYYERELSFLRRYSREFSERYPKIAGSLLMAGEICEDPHIERMIQSYALLNARVS 60 +QELLPYYERELSFLRRYSR+FSERYPKIAGSLLMAGEICEDPHIERMIQSYALLNARVS Sbjct: 1 MQELLPYYERELSFLRRYSRDFSERYPKIAGSLLMAGEICEDPHIERMIQSYALLNARVS 60 Query: 61 KRLDDDYPEFTEALFEVLYPHYLRPFPSCSIARMDSAASAAQLTNATVIPRGTALSTRPV 120 KRLDDDYP+FTEALFEVLYPHYLRPFPSCSIARMD A SA QLT+AT+IPRGT LSTRPV Sbjct: 61 KRLDDDYPQFTEALFEVLYPHYLRPFPSCSIARMDCAESAEQLTSATIIPRGTTLSTRPV 120 Query: 121 KGVICRFQSAYDVPVAPIRLAQAVFSPIIDAPEAVVLPTSVTSSLSITIETTTEQVTLSK 180 KGV+C+FQ+ YDVPVAPI L AVFSPIIDAPEAVVLPTSVTSSLSI I T EQ+ L+K Sbjct: 121 KGVVCQFQTVYDVPVAPICLTHAVFSPIIDAPEAVVLPTSVTSSLSIGIATAGEQLALAK 180 Query: 181 LGLASLRVFIDGEASFCAALRDSLFMRSTAAWVELPRSGRWTGLRKVPLAEVGFAEEDAL 240 L L SLRVFIDGEASFCAALRDSLFMRS AAW+ELP S RW L +PLAEVGFA+EDAL Sbjct: 181 LDLVSLRVFIDGEASFCAALRDSLFMRSAAAWIELPGSRRWVPLPAIPLAEVGFADEDAL 240 Query: 241 IDFPSQSHPAYRLLTEYFAFPEKFNFFDIDLSAILAVLPAGTKSFTLHLGLSGLRADSHI 300 IDFPSQSHPAYR LTEYFAFPEKFNFFDIDLSAILAVLPA +KSF LHLGLSGLRADSHI Sbjct: 241 IDFPSQSHPAYRHLTEYFAFPEKFNFFDIDLSAILAVLPADSKSFILHLGLSGLRADSHI 300 Query: 301 ARQLGGVSAANLLLGCTPVINLFSQRGDPIRLTHAGASYPVLPDGRRAFGYEVYSIDSVQ 360 ARQLGGVSAANLLLGCTPVINLFSQRGDPIRLTHAGA YPVLPDGRRAFGYEVYSIDSVQ Sbjct: 301 ARQLGGVSAANLLLGCTPVINLFSQRGDPIRLTHAGAYYPVLPDGRRAFGYEVYSIDSVQ 360 Query: 361 LVRQTPQGESITRFRPFYSLRHGQAPESDGHYWAMRRDELVALKSPGYETEISIVDIDFD 420 LVR+TPQGESIT FRPFYSLRHGQ+PESDGHYWAMRRDEL+ALKSPGYETEISIVDIDFD Sbjct: 361 LVRETPQGESITSFRPFYSLRHGQSPESDGHYWAMRRDELIALKSPGYETEISIVDIDFD 420 Query: 421 PAKVETDTLSIELTCTNRDLPALLTYGLPGGDLSLEGGGVIRTAALLRKPTLPSRFERGR 480 P+K+ETDTLSIELTCTNRDLPALL YGLPGGDLSLEGGGVIRTAALLRKPTLPSRFERGR Sbjct: 421 PSKIETDTLSIELTCTNRDLPALLAYGLPGGDLSLEGGGVIRTAALLRKPTLPSRFERGR 480 Query: 481 GAQWRLISHLSLNHLSLMRGGLEAFQEMLTLYDQSNSPISQRQISAIAAIDHKATTAWLP 540 GAQWRLIS LSLNHLSLMR GLEAFQEMLTLYDQSNSPISQRQISAIAAIDH+ TAWLP Sbjct: 481 GAQWRLISQLSLNHLSLMRVGLEAFQEMLTLYDQSNSPISQRQISAIAAIDHRPATAWLP 540 Query: 541 GNPFASLVRGIEVKLTVDEEGFVGSGLHAFAGVIDRFMGLYVHANSFSQLTVISKRTGEE 600 GNPFASLVRGIEVKLTVDEEGFVGSGLHAFAGVIDRFMGLYVHANSFSQLTVISKRTGEE Sbjct: 541 GNPFASLVRGIEVKLTVDEEGFVGSGLHAFAGVIDRFMGLYVHANSFSQLTVISKRTGEE 600 Query: 601 LLKCRPRSGDLSLA 614 LLKCRPRSGDLSLA Sbjct: 601 LLKCRPRSGDLSLA 614 >gi|300310080|ref|YP_003774172.1| hypothetical protein Hsero_0745 [Herbaspirillum seropedicae SmR1] Length = 614 Score = 1104 bits (2855), Expect = 0.0, Method: Compositional matrix adjust. Identities = 544/614 (88%), Positives = 587/614 (95%) Query: 1 VQELLPYYERELSFLRRYSREFSERYPKIAGSLLMAGEICEDPHIERMIQSYALLNARVS 60 +QELLPYYERELSFLRRYSREFSERYPKIAGSLLM+GE+CEDPHIERMIQSYALLNARVS Sbjct: 1 MQELLPYYERELSFLRRYSREFSERYPKIAGSLLMSGEVCEDPHIERMIQSYALLNARVS 60 Query: 61 KRLDDDYPEFTEALFEVLYPHYLRPFPSCSIARMDSAASAAQLTNATVIPRGTALSTRPV 120 KRLDDDYPEFTEALFEVLYPHYLRPFPSCSIARMD AASAAQLT A+VIPRGTAL+TR V Sbjct: 61 KRLDDDYPEFTEALFEVLYPHYLRPFPSCSIARMDYAASAAQLTTASVIPRGTALTTRQV 120 Query: 121 KGVICRFQSAYDVPVAPIRLAQAVFSPIIDAPEAVVLPTSVTSSLSITIETTTEQVTLSK 180 KGV C+FQ+AYDV VAPIRL+ A F+PII+APEAV LPTSV+SSLSI I+TT+EQ+TL++ Sbjct: 121 KGVACKFQTAYDVTVAPIRLSHATFAPIIEAPEAVTLPTSVSSSLSIVIDTTSEQLTLAQ 180 Query: 181 LGLASLRVFIDGEASFCAALRDSLFMRSTAAWVELPRSGRWTGLRKVPLAEVGFAEEDAL 240 LGL+SLRVFIDGEASFCAALRDSLFMRS AAWVELP SGRWT LRKVPLAEVGFAE+DAL Sbjct: 181 LGLSSLRVFIDGEASFCAALRDSLFMRSVAAWVELPNSGRWTALRKVPLAEVGFAEDDAL 240 Query: 241 IDFPSQSHPAYRLLTEYFAFPEKFNFFDIDLSAILAVLPAGTKSFTLHLGLSGLRADSHI 300 IDFP++SHPAYRLLTEYF FPEKFNFFD+DL+AILA+LP GT+ FTLHLGLSGLRADSH+ Sbjct: 241 IDFPARSHPAYRLLTEYFCFPEKFNFFDLDLAAILALLPTGTRKFTLHLGLSGLRADSHV 300 Query: 301 ARQLGGVSAANLLLGCTPVINLFSQRGDPIRLTHAGASYPVLPDGRRAFGYEVYSIDSVQ 360 ARQLGGVSAANLLLGCTPVINLF QRGDPIRLTHAGASYPV+PD RRAFGYEVYSIDSVQ Sbjct: 301 ARQLGGVSAANLLLGCTPVINLFRQRGDPIRLTHAGASYPVVPDARRAFGYEVYSIDSVQ 360 Query: 361 LVRQTPQGESITRFRPFYSLRHGQAPESDGHYWAMRRDELVALKSPGYETEISIVDIDFD 420 LVRQTPQGES+T+FRPFYSLRHGQ+PE +GHYWAMRRDELVALKSPGYETEISIVDIDFD Sbjct: 361 LVRQTPQGESVTQFRPFYSLRHGQSPEKEGHYWAMRRDELVALKSPGYETEISIVDIDFD 420 Query: 421 PAKVETDTLSIELTCTNRDLPALLTYGLPGGDLSLEGGGVIRTAALLRKPTLPSRFERGR 480 PA+VETDTLSIELTCTNRDLPA LTYGLPGGDL +EGGG++R+AALLRKPTLP+RFERGR Sbjct: 421 PAEVETDTLSIELTCTNRDLPASLTYGLPGGDLQMEGGGLVRSAALLRKPTLPARFERGR 480 Query: 481 GAQWRLISHLSLNHLSLMRGGLEAFQEMLTLYDQSNSPISQRQISAIAAIDHKATTAWLP 540 GA WRLISHLSLNHLSLMRGGLEAFQEMLTLYD SNSPISQRQI AI +IDHKA+TAWLP Sbjct: 481 GAHWRLISHLSLNHLSLMRGGLEAFQEMLTLYDLSNSPISQRQIGAIVSIDHKASTAWLP 540 Query: 541 GNPFASLVRGIEVKLTVDEEGFVGSGLHAFAGVIDRFMGLYVHANSFSQLTVISKRTGEE 600 GNPFASLVRGIEVKLTVDEEGFVGSGLHAFAGVIDRF+GLYVHANSF+QL V+SKRT EE Sbjct: 541 GNPFASLVRGIEVKLTVDEEGFVGSGLHAFAGVIDRFLGLYVHANSFTQLRVLSKRTAEE 600 Query: 601 LLKCRPRSGDLSLA 614 LL C+PRSGDL+LA Sbjct: 601 LLICKPRSGDLNLA 614 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.137 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,848,944 Number of extensions: 76988 Number of successful extensions: 208 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 208 Number of HSP's successfully gapped: 2 Length of query: 614 Length of database: 1,619,870 Length adjustment: 91 Effective length of query: 523 Effective length of database: 1,188,985 Effective search space: 621839155 Effective search space used: 621839155 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 133 (55.8 bits)