BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0024.0051.p (497 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313323|ref|YP_003777415.1| hypothetical protein Hsero_4036... 987 0.0 gi|300310077|ref|YP_003774169.1| hypothetical protein Hsero_0742... 974 0.0 >gi|300313323|ref|YP_003777415.1| hypothetical protein Hsero_4036 [Herbaspirillum seropedicae SmR1] Length = 497 Score = 987 bits (2551), Expect = 0.0, Method: Compositional matrix adjust. Identities = 485/497 (97%), Positives = 494/497 (99%) Query: 1 MSAQANTEAAASAAPAAAASTLLDDIVEQSKVAKSSSEHDRAKDLITELVSQVMEGTVVV 60 MSAQA+ EAAASAAPAAA STLLDDIVEQSKVAKSSSEHDRAKDLI+ELVSQVMEGTVVV Sbjct: 1 MSAQAHIEAAASAAPAAAGSTLLDDIVEQSKVAKSSSEHDRAKDLISELVSQVMEGTVVV 60 Query: 61 SDNLSATLDARIAELDHLISNQVSAIMHAPEFQKLEGSWTGLNYLVRNTTVGENQKIKIL 120 S+NLSATLDARIAELD LIS+QVSAIMHAPEFQKLEGSWTGLNYLVRNTTVGENQKIKIL Sbjct: 61 SENLSATLDARIAELDRLISSQVSAIMHAPEFQKLEGSWTGLNYLVRNTTVGENQKIKIL 120 Query: 121 NATKKELVKDFNSALEFDQSAMFKKVYEEEFGTFGGAPFGALLGDYEITRQPEDMYFIEQ 180 NATKKELVKDFNSALEFDQSAMFKKVYEEEFGTFGGAPFGALLGD+EITRQPEDMYFIEQ Sbjct: 121 NATKKELVKDFNSALEFDQSAMFKKVYEEEFGTFGGAPFGALLGDFEITRQPEDMYFIEQ 180 Query: 181 MSRIAAASHAPFITAASPELFGLESYADLGKPRDLSKVFDTVEYAKWKSFRESEDSRYVG 240 MSRIAAASHAPFITAASPELFGLES+++LGKPRDLSKVFDTVEYAKWKSFRESEDSRYVG Sbjct: 181 MSRIAAASHAPFITAASPELFGLESFSELGKPRDLSKVFDTVEYAKWKSFRESEDSRYVG 240 Query: 241 LTLPRFLGRLPFNPKDGTTVEGFNFVEDVDGTDHSKYLWCNAAYAFGSKLTKAFEDFGWC 300 LTLPRFLGRLPFNPKDGTTVEGFNFVEDVDGTDHSKYLWCNAAYAFGSKLTKAFEDFGWC Sbjct: 241 LTLPRFLGRLPFNPKDGTTVEGFNFVEDVDGTDHSKYLWCNAAYAFGSKLTKAFEDFGWC 300 Query: 301 AAIRGVEGGGLVEDLPTHTFKTDEGEVALKCPTEIAITDRREKELSDLGFISLVHCKNTD 360 AAIRGVEGGGLVEDLPTHTFKTDEGEVALKCPTEIAITDRREKELSDLGFISLVHCKNTD Sbjct: 301 AAIRGVEGGGLVEDLPTHTFKTDEGEVALKCPTEIAITDRREKELSDLGFISLVHCKNTD 360 Query: 361 YAAFFGAQSAQKPKKYNTDAANANAVLSSQLQYIFAVSRIAHYMKSMMRDKIGSFAAASN 420 YAAFFGAQSAQKPKKYN+DAANANAVLSSQLQYIFAVSRIAHYMKSMMRDKIGSFAAASN Sbjct: 361 YAAFFGAQSAQKPKKYNSDAANANAVLSSQLQYIFAVSRIAHYMKSMMRDKIGSFAAASN 420 Query: 421 VEDFLNRWIAQYVLLDDNATQEAKAQFPLREASVQVSEVPGRPGVYRAVSFLRPHFQLDE 480 VEDFLNRWIAQYVLLDDNATQEAKAQFPLREASVQVSEVPGRPGVYRAVSFLRPHFQLDE Sbjct: 421 VEDFLNRWIAQYVLLDDNATQEAKAQFPLREASVQVSEVPGRPGVYRAVSFLRPHFQLDE 480 Query: 481 LSVSLRLVAELPQAGKS 497 LSVSLRLVAELPQAGKS Sbjct: 481 LSVSLRLVAELPQAGKS 497 >gi|300310077|ref|YP_003774169.1| hypothetical protein Hsero_0742 [Herbaspirillum seropedicae SmR1] Length = 495 Score = 974 bits (2518), Expect = 0.0, Method: Compositional matrix adjust. Identities = 474/497 (95%), Positives = 489/497 (98%), Gaps = 2/497 (0%) Query: 1 MSAQANTEAAASAAPAAAASTLLDDIVEQSKVAKSSSEHDRAKDLITELVSQVMEGTVVV 60 MSAQ ++E AA+ A AA+++LLDDIVEQSKVAKS+SEHDRAKDLITELV+QVMEGTVVV Sbjct: 1 MSAQLHSETAAAPA--AASASLLDDIVEQSKVAKSASEHDRAKDLITELVNQVMEGTVVV 58 Query: 61 SDNLSATLDARIAELDHLISNQVSAIMHAPEFQKLEGSWTGLNYLVRNTTVGENQKIKIL 120 S NLSATLDARIAELD LIS+QVSAIMHAPEFQKLEGSWTGLNYLVRNTTVGENQKIKIL Sbjct: 59 SSNLSATLDARIAELDKLISSQVSAIMHAPEFQKLEGSWTGLNYLVRNTTVGENQKIKIL 118 Query: 121 NATKKELVKDFNSALEFDQSAMFKKVYEEEFGTFGGAPFGALLGDYEITRQPEDMYFIEQ 180 NATKKELVKDFNSALEFDQSAMFKKVYEEEFGTFGGAPFG LLGD+EITRQPEDMYFIEQ Sbjct: 119 NATKKELVKDFNSALEFDQSAMFKKVYEEEFGTFGGAPFGVLLGDFEITRQPEDMYFIEQ 178 Query: 181 MSRIAAASHAPFITAASPELFGLESYADLGKPRDLSKVFDTVEYAKWKSFRESEDSRYVG 240 MSRIAAASHAPF+TAASPELFGLESYADLGKPRDLSKVFDTVEYAKWKSFRESEDSRYVG Sbjct: 179 MSRIAAASHAPFVTAASPELFGLESYADLGKPRDLSKVFDTVEYAKWKSFRESEDSRYVG 238 Query: 241 LTLPRFLGRLPFNPKDGTTVEGFNFVEDVDGTDHSKYLWCNAAYAFGSKLTKAFEDFGWC 300 LTLPRFLGRLPFNPKDGTTVEGFNFVEDVDG+DHSKYLWCNAAYAFG+KLTKAFEDFGWC Sbjct: 239 LTLPRFLGRLPFNPKDGTTVEGFNFVEDVDGSDHSKYLWCNAAYAFGTKLTKAFEDFGWC 298 Query: 301 AAIRGVEGGGLVEDLPTHTFKTDEGEVALKCPTEIAITDRREKELSDLGFISLVHCKNTD 360 AAIRGVEGGGLVEDLPTHTFKTDEGEVALKCPTEIAITDRREKELSDLGFISLVHCKNTD Sbjct: 299 AAIRGVEGGGLVEDLPTHTFKTDEGEVALKCPTEIAITDRREKELSDLGFISLVHCKNTD 358 Query: 361 YAAFFGAQSAQKPKKYNTDAANANAVLSSQLQYIFAVSRIAHYMKSMMRDKIGSFAAASN 420 YAAFFGAQSAQKPKKYNTD+ANANAVLSSQLQYIFAVSRIAHYMKSMMRDKIGSFAAASN Sbjct: 359 YAAFFGAQSAQKPKKYNTDSANANAVLSSQLQYIFAVSRIAHYMKSMMRDKIGSFAAASN 418 Query: 421 VEDFLNRWIAQYVLLDDNATQEAKAQFPLREASVQVSEVPGRPGVYRAVSFLRPHFQLDE 480 VEDFLNRWI+QYVLLDDNATQEAKAQFPLREASVQVSEVPGRPGVYRAVSFLRPHFQLDE Sbjct: 419 VEDFLNRWISQYVLLDDNATQEAKAQFPLREASVQVSEVPGRPGVYRAVSFLRPHFQLDE 478 Query: 481 LSVSLRLVAELPQAGKS 497 LSVSLRLVAELPQAGKS Sbjct: 479 LSVSLRLVAELPQAGKS 495 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.316 0.131 0.373 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,390,794 Number of extensions: 56066 Number of successful extensions: 151 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 151 Number of HSP's successfully gapped: 2 Length of query: 497 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 408 Effective length of database: 1,198,455 Effective search space: 488969640 Effective search space used: 488969640 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 132 (55.5 bits)