BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0024.0048.p
         (205 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313326|ref|YP_003777418.1| transmembrane protein [Herbaspi...   333   4e-93
gi|300310074|ref|YP_003774166.1| transmembrane protein [Herbaspi...   302   1e-83

>gi|300313326|ref|YP_003777418.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 209

 Score =  333 bits (855), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 170/204 (83%), Positives = 185/204 (90%)

Query: 1   LINHLTTGVVIFSLSGCAAVGAASGVAQAAKSTLEALGLKKPDTPELPDAQKQPRTVPIK 60
           L NHL T + IFSLSGCAAVGAAS VAQAA+STLEALGLKK + PE+PDA KQPR++PIK
Sbjct: 5   LTNHLATVIAIFSLSGCAAVGAASSVAQAARSTLEALGLKKAEPPEVPDAMKQPRSIPIK 64

Query: 61  LHASKALNVDSQQRPLALVVKIYKLKQNISFQQASYDTFLSAQKEKEALGADLLEVKEVT 120
           LHAS+ALN+D QQRPLALVVKIYKLKQNISFQQASYDTFLS QKEKEALGADL+EVKE+T
Sbjct: 65  LHASRALNLDPQQRPLALVVKIYKLKQNISFQQASYDTFLSTQKEKEALGADLMEVKEIT 124

Query: 121 LVPGQRYEISEKVSYEAGYIGVVALFVNPAPQRWRVVFKADEAEKNGITVGLQSCSLTVG 180
           LVP QRYEI EKVSYEAGYIGVVALFVNPA QRWR+ FKADEAEK GITVG+QSCSLT+G
Sbjct: 125 LVPDQRYEIIEKVSYEAGYIGVVALFVNPAQQRWRIAFKADEAEKIGITVGVQSCSLTLG 184

Query: 181 AGAVAIDMQGKPLEKNLMLAPVQC 204
            GA A+D QGKPLEK+L LAPVQC
Sbjct: 185 KGAAAVDTQGKPLEKDLTLAPVQC 208


>gi|300310074|ref|YP_003774166.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 174

 Score =  302 bits (774), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 145/171 (84%), Positives = 160/171 (93%)

Query: 34  LEALGLKKPDTPELPDAQKQPRTVPIKLHASKALNVDSQQRPLALVVKIYKLKQNISFQQ 93
           +EALGLKKPD PE+PD+ KQPR+V IKLHASKALN+D+Q+RPLALVVKIYKLKQNISFQQ
Sbjct: 1   MEALGLKKPDAPEVPDSMKQPRSVFIKLHASKALNLDAQKRPLALVVKIYKLKQNISFQQ 60

Query: 94  ASYDTFLSAQKEKEALGADLLEVKEVTLVPGQRYEISEKVSYEAGYIGVVALFVNPAPQR 153
           ASY+TFLS QKEKE LGADLLEVKEVTLVPGQRYE  EKVSYEAGY+GVVAL+VNPA QR
Sbjct: 61  ASYETFLSPQKEKELLGADLLEVKEVTLVPGQRYEAVEKVSYEAGYVGVVALYVNPAQQR 120

Query: 154 WRVVFKADEAEKNGITVGLQSCSLTVGAGAVAIDMQGKPLEKNLMLAPVQC 204
           WR+ FKADE+EK+GITVGLQSCS+TVGAGA AID QG+PLEKNLMLAPVQC
Sbjct: 121 WRLAFKADESEKSGITVGLQSCSVTVGAGAAAIDAQGQPLEKNLMLAPVQC 171


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.131    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 575,154
Number of extensions: 21510
Number of successful extensions: 70
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 70
Number of HSP's successfully gapped: 2
Length of query: 205
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 124
Effective length of database: 1,236,335
Effective search space: 153305540
Effective search space used: 153305540
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 128 (53.9 bits)