BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0024.0045.p (959 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310071|ref|YP_003774163.1| VGR-related protein [Herbaspiri... 1575 0.0 gi|300313606|ref|YP_003777698.1| VGR-related type VI secretion s... 383 e-107 gi|300310083|ref|YP_003774175.1| VGR-related type VI secretion s... 376 e-105 gi|300310274|ref|YP_003774366.1| VGR-related protein [Herbaspiri... 359 e-100 gi|300310098|ref|YP_003774190.1| VGR-related protein [Herbaspiri... 331 1e-91 >gi|300310071|ref|YP_003774163.1| VGR-related protein [Herbaspirillum seropedicae SmR1] Length = 954 Score = 1575 bits (4079), Expect = 0.0, Method: Compositional matrix adjust. Identities = 786/960 (81%), Positives = 867/960 (90%), Gaps = 7/960 (0%) Query: 1 MNLPFPDSLSSVINQLFGPGLSQHARLITLASAQEAGLPESLVVERFHGQESVNDNFQFE 60 MNLP PDSL++ + +LFG GLSQ+ARLIT+ +AQ AGLPE+L VERF G+ESVNDNF+F+ Sbjct: 1 MNLPLPDSLTAAVTELFGTGLSQNARLITMTTAQSAGLPETLAVERFEGEESVNDNFRFD 60 Query: 61 IDALSVSTDLDLKQFIGTELTLRLLQADGSRRAWHGYCTQASWLGADGGLARYRLRLESF 120 IDALS+STDLDLKQFIG E++LRLLQADG RAWHGYCTQASWLGADGGLARYRLRLESF Sbjct: 61 IDALSISTDLDLKQFIGAEISLRLLQADGGTRAWHGYCTQASWLGADGGLARYRLRLESF 120 Query: 121 LAFLDRRRDSFLFQDMSVTDIASAVLKEYPQANFALDVTQTLTKRDICTQYRESDFAFLR 180 LAFLDRR DSFLFQDM+VTDIA+AVLKEYPQANF+L+VTQTL KRDICTQYRE+D+AFLR Sbjct: 121 LAFLDRRHDSFLFQDMTVTDIAAAVLKEYPQANFSLEVTQTLAKRDICTQYRETDYAFLR 180 Query: 181 RILASEGLNFRFEHQQE-GEQGQASGQQQARHKLVIFDREAKAPDLPGGDTRIRFHRIAA 239 RILASEGLNFRFEH+Q+ Q Q ARHKLVIFDR AKAP LPGGD IRFHR+AA Sbjct: 181 RILASEGLNFRFEHEQDDATQQHDQSQPHARHKLVIFDRNAKAPALPGGDEYIRFHRVAA 240 Query: 240 TEASDAITDFSAVRSVRSNAVALASWHPEKISSPSAEENSSLDAGEVPALAVYDGTGQQD 299 EASDAITDF+AVRSVR N VALASWHPEK+SSPS EE S+LDAGE+P+L VYDGTGQQD Sbjct: 241 MEASDAITDFAAVRSVRPNGVALASWHPEKLSSPSHEEGSTLDAGELPSLPVYDGTGQQD 300 Query: 300 FADQEAAATHAQLMLQALEMQNKRFEGAGAARQLSAGTQFTLSQHERHPEGENRFKLLSV 359 FADQ+AAA HAQLMLQALEMQNKRFEGAGAARQL+AG +FTL QHER+PEGEN FK++SV Sbjct: 301 FADQDAAAAHAQLMLQALEMQNKRFEGAGAARQLAAGARFTLLQHERYPEGENAFKVVSV 360 Query: 360 RHSARNNFDSNITQILEQFIPASLANLFGKTPSSGGLSDDDLKAGTYRNSFVAVREVVPI 419 RH+ARNN +NIT+IL PA+ A LFG S+ DDDL+AGTYRNSF A+R+ VP+ Sbjct: 361 RHAARNNVSANITRILA---PAAGA-LFGG--SAAAERDDDLQAGTYRNSFTAIRDSVPM 414 Query: 420 VPAAITERLKPTARGTQTALVTGLPDAAVTTDRNHRVKVQFHWQRGKSPNPGGLRETGNL 479 VPAAI ERLKPTARGTQTALVTG DAAVTTDRNHRVKVQFHWQRGKSPNPGGLRETGNL Sbjct: 415 VPAAIAERLKPTARGTQTALVTGAADAAVTTDRNHRVKVQFHWQRGKSPNPGGLRETGNL 474 Query: 480 DDKDGNAPGNDASGTWVRVAEAQSGPNWGSQFTPRIGSEVLIDFIEGDIDRPVVVAQLYN 539 DDKDGNA GND+SGTW+RVAEAQSGPNWGSQF PR+GSEVL+DFIEGDIDRPVVVAQLYN Sbjct: 475 DDKDGNANGNDSSGTWIRVAEAQSGPNWGSQFIPRVGSEVLVDFIEGDIDRPVVVAQLYN 534 Query: 540 GNDVPPFPAGAESDANHAGTISGWHSTAHDGSGFNQWVVDDTQSQLRMRLASSQGKSELN 599 G+D PPFPAGA+S NHAG+ISGWHSTAHDGSGFNQWVVDDTQSQLRMRLASS KS+LN Sbjct: 535 GSDAPPFPAGADSGINHAGSISGWHSTAHDGSGFNQWVVDDTQSQLRMRLASSTAKSQLN 594 Query: 600 LGHLIDQADTGAQRGSYRGQGFELRTDAWGVVRGAEGLLISSTARPVAGASVTSTQMDAH 659 LGHL++QADTGAQRGSYRGQGFELR+DAWGVVRG EGLL+S+TARP+ GASVT TQMDA Sbjct: 595 LGHLVEQADTGAQRGSYRGQGFELRSDAWGVVRGGEGLLLSTTARPLNGASVTGTQMDAA 654 Query: 660 EAVAQLKGAQQLAQTMGEAATQQQALHSADALQAKTDFISVIDPQDQGKHPASVNGQDAF 719 A+AQLKGA+ LAQTM ++ATQQQAL S ALQAKTDF+++IDP DQGKHPASVNGQDA Sbjct: 655 GAIAQLKGAKSLAQTMSDSATQQQALSSTQALQAKTDFLALIDPSDQGKHPASVNGQDAL 714 Query: 720 KSQAGSRESDSSQPVEKFSKAAVLMESPSNVNWASAASTVLYAGANLHWTTQGDTHWTAA 779 KS +R +D++QPVEKF+KAAVLM+SPS++NW S AST+LYA NL WTTQGD HW+AA Sbjct: 715 KSDGSTRNTDAAQPVEKFAKAAVLMDSPSSINWTSNASTLLYAAENLQWTTQGDVHWSAA 774 Query: 780 DTASLAAGKAATLFAHDGGIQAFAGNGPVSLQAHTDALEILADKDVSVISVNEGIEIKAR 839 DTAS AAGKAA+ ++HDGGIQAFA NGPVSLQAHTDALEILADKDV+V SVN+ IEIKAR Sbjct: 775 DTASAAAGKAASFYSHDGGIQAFAANGPVSLQAHTDALEILADKDVTVTSVNDSIEIKAR 834 Query: 840 QKIVLQAGQASVTLEGGNITFACPGTFSVKGATHAFPGGASVSPDLMALPDTKYKLFDEA 899 QKIVLQAGQASVTLEGGNITFACPGTFSVKGATHAFPGGASVSPDLMALPDTKYKLFDEA Sbjct: 835 QKIVLQAGQASVTLEGGNITFACPGTFSVKGATHAFPGGASVSPDLMALPDTKYKLFDEA 894 Query: 900 FVVKDPNGTPLSDIPYRIKSSAGDQLAATAKDGMSERVGTEASEHVEFAMEWFKVVPAKS 959 FVVKDPNGTPLSDIPYRIKSSAGDQLA TAKDGMSERV TEASE+VEFAMEWFKVVPAK+ Sbjct: 895 FVVKDPNGTPLSDIPYRIKSSAGDQLATTAKDGMSERVSTEASENVEFAMEWFKVVPAKT 954 >gi|300313606|ref|YP_003777698.1| VGR-related type VI secretion system protein [Herbaspirillum seropedicae SmR1] Length = 886 Score = 383 bits (984), Expect = e-107, Method: Compositional matrix adjust. Identities = 293/950 (30%), Positives = 447/950 (47%), Gaps = 123/950 (12%) Query: 21 LSQHARLITLASAQEAGLPESLVVERFHGQESVNDNFQFEIDALSVSTDLDLKQFIGTEL 80 ++QH RL+ L S+ P+ L+ +R E +ND ++ ID L+ T + L+Q I + Sbjct: 16 ITQHRRLLQLDSSLG---PDILLPQRLVATERLNDGYEVTIDLLATHTGIALEQLIAQPV 72 Query: 81 TLRLLQADGSRRAWHGYCTQASWLGADGGLARYRLRLESFLAFLDRRRDSFLFQDMSVTD 140 TL + Q DG HGY A LG+DG L +L L +L FL R+D+ ++QD D Sbjct: 73 TLWIRQHDGDTLPLHGYVHTAKRLGSDGELDFCQLSLSPWLHFLRFRKDARIWQDKRTED 132 Query: 141 IASAVLKEYPQA--NFALDVTQTLTKRDICTQYRESDFAFLRRILASEGLNFRFEHQQEG 198 I + V +PQA ++ + + T R CTQY E+D+ F++R++ EG F H ++ Sbjct: 133 ILADVFNNHPQARGHYRFQLERPYTPRPYCTQY-ETDWHFVQRLMEEEGW---FAHHEQR 188 Query: 199 EQGQASGQQQARHKLVIFDREAKAPDLPGGDTRIRFHRIAATEASDAITDFSAVRSVRSN 258 E G H LVI D P LP I FH A + D I +SA R++ S Sbjct: 189 EDGSG-------HVLVITDNTWNLPGLP--QQGIAFHGAAPRDELDKILHWSASRTLSSK 239 Query: 259 AVALASWHPEKISSP----SAEENSSLDAGEVPA-LAVYDGTGQQDFADQEAAATHAQLM 313 S + SP AEE + G++PA L +Y+ TG F QE A L Sbjct: 240 GWRGRS---DDYKSPGMKKEAEEQVMPEYGQLPAQLEMYEYTGAYSFRLQEQGNRQADLQ 296 Query: 314 LQALEMQNKRFEGAGAARQLSAGTQFTLSQHERH---PEGENRFKLLSVRHSARNNFDSN 370 ++ E +R+ R L+ G F L +H +H P+ E +F +L++ NN + Sbjct: 297 VEQWESSMQRYSAVSGVRNLACGRWFRLEEHPQHRAEPDRERQFVILAIDWFVENNLPLS 356 Query: 371 ITQILEQFIPASLANLFGKTPSS-----GGLSDDDLKAGTYRNSFVAVREVVPIVPAAIT 425 Q L+ P SL S D+ G N F R +P PA Sbjct: 357 -HQALD--FPGSLKGALMAFKESIRRERQVAETDNEHTGHCFNRFEVQRRKLPFRPARAH 413 Query: 426 ER--LKPTARGTQTALVTGLPDAAVTTDRNHRVKVQFHWQRGKSPNPGGLRETGNLDDKD 483 R + P QTA+V G V TD R+KVQF W R Sbjct: 414 ARPVMLP-----QTAIVVGPASEEVYTDHLDRIKVQFRWDRIN----------------- 451 Query: 484 GNAPGNDASGTWVRVAEAQSGPNWGSQFTPRIGSEVLIDFIEGDIDRPVVVAQLYNGNDV 543 PGN+A+ WVRV+ +G WG+ PRIG EV++ F+ GD DRPVV +L+N Sbjct: 452 ---PGNEAASCWVRVSYPNAGQYWGAIQVPRIGQEVIVSFLNGDPDRPVVTGRLFNAEQR 508 Query: 544 PPFPAGAESDANHAGTISGWHSTAHDGSGFNQWVVDDTQSQLRMRLASSQGKSELNLGHL 603 P + + G +SG S G+GFNQ V+DDT Q R+ L S+ ++LNLGHL Sbjct: 509 PQW--------HTNGRLSGVKSKEFGGTGFNQMVMDDTPEQNRIHLYSTNTHAQLNLGHL 560 Query: 604 IDQADTGAQRGSYRGQGFELRTDAWGVVRGAEGLLISSTARPVAGASVTSTQMDAHEAVA 663 + Q TG +R S+ G GF L TDA+G + +GL IS+ RP A TQ+DA EA Sbjct: 561 VSQ--TGNERRSFFGSGFALSTDAYGAIVTHKGLYISTYGRPGA----QGTQLDAREATG 614 Query: 664 QLKGAQQLAQTMGEAATQQQALHSADALQAKTDFISVIDPQDQGKHPASVNGQDAFKSQA 723 QLK L++T+ E A + G P + GQ+A + Sbjct: 615 QLKSGANLSRTLSETAAKA------------------------GAEP--LAGQEALRDFI 648 Query: 724 GSRESDSSQPVE----KFSKAAVLMESPSNVNWASAASTVLYAGANLHWTTQGDTHWTAA 779 + ++D P + +F +A +L SP + + +AG + ++ DT Sbjct: 649 DATQADYEDPSQAQANRFQQAILLAASPDGIGLTTPKGVHTHAGGEITLSSGADTSIAVG 708 Query: 780 DTASLAAGKAATLFAHDGGIQAFAGNGPVSLQAHTDALEILADKDVSVISVNEGIEIKAR 839 + + + +LFA GI+ F+ G V +QA +D LE++A+K ++S + +EI+A+ Sbjct: 709 KSLLASVAEKISLFAFKAGIKLFSAKGKVEVQAQSDDLELIAEKVARLLSASGRVEIRAK 768 Query: 840 QKIVLQAGQASVTLEGGNITFACPGTFSVKGATHAFPGGASVSPDL----MALPDTKYKL 895 +++++ AG + + L IT G + K THA PG +++ ++ ALP Sbjct: 769 EEVLITAGGSFIRLNASGITQGTSGAWEAKAGTHAMPGPTTLAYEMNKSSAALP------ 822 Query: 896 FDEAFVVKDP-NGTPLSDIPYRIKSSAGDQLA----ATAKDGMSERVGTE 940 FDE FV++ P + +P+ + + I G ++ A K G+ + + E Sbjct: 823 FDEEFVLRWPYDQSPVKNRRFEIVRGDGTKVRGVTDAQGKTGLQKSLFVE 872 >gi|300310083|ref|YP_003774175.1| VGR-related type VI secretion system protein [Herbaspirillum seropedicae SmR1] Length = 944 Score = 376 bits (965), Expect = e-105, Method: Compositional matrix adjust. Identities = 300/934 (32%), Positives = 447/934 (47%), Gaps = 111/934 (11%) Query: 16 LFGPGLSQHARLITLASA--QEAGLPESLVVERFHGQESVNDN------------FQFEI 61 LFG SQ AR++ L + Q+ G P +L+ ER E V ++ ++ Sbjct: 9 LFG-AWSQSARVMRLHTPLDQDYG-PHALMAERLQAVEQVGPGEDSSAIDQAIAGYRLQL 66 Query: 62 DALSVSTDLDLKQFIGTELTLRLLQADGSRRAWHGYCTQASWLGADGGLARYRLRLESFL 121 LS++ D+ L++ +G + L L DG RA+HG+ T GA+GG+ARY L +E +L Sbjct: 67 SCLSLNADISLRKLLGQPVLLEL-DTDGGARAFHGHVTACRMEGANGGMARYLLTIEPWL 125 Query: 122 AFLDRRRDSFLFQDMSVTDIASAVLKEY-------PQANFALDVTQTLTKRDICTQYRES 174 +FL RRDS +FQDMS I AV +Y P L KR + TQY+E+ Sbjct: 126 SFLRHRRDSAVFQDMSAPAIIEAVFADYRGQGRLQPAWRLDLQDASAYAKRSLATQYQET 185 Query: 175 DFAFLRRILASEGLNFRFEHQQEGEQGQASGQQQARHKLVIFDREAKAPDLPGGDTRIRF 234 D AF+ R++ EGL + EH QG ++ H +VI D P + + F Sbjct: 186 DLAFVTRLMVEEGLFYYIEH-----QGDSNSASLGSHTVVIADHNGSFK--PNARSTVAF 238 Query: 235 HRIAATEASDAITDFSAVRSVRSNAVALASWHPEKISSPSAEENSS-LDAGEVPALAVYD 293 + A A D I + +VR ++NAV + +W + + +A SS +A + L D Sbjct: 239 AQTNAVMAQDNIDRWRSVRRWQTNAVEILTWDYRQTAVRAASTASSGENAHDKLVLTSRD 298 Query: 294 GTGQQDFADQEAAATHAQLMLQALEMQNKRFEGAGAARQLSAGTQFTLS-QHERHPEGEN 352 GQ E A A +QA+E++NK F GAG R GT FTL+ ++ ++ Sbjct: 299 APGQYINESPEQAQRQALNQMQAIEVRNKVFTGAGTVRSFLPGTTFTLTGHYDHDGGDDD 358 Query: 353 RFKLLSVRHSARNNFDSNITQILEQFIPASLANLFGKTP-----SSGGLSDDDLKAG--- 404 +F LL V H A NN +++ A + L G+ G L D L++ Sbjct: 359 QFVLLRVVHQAHNNLSADLK--------AGVTALLGQAQLDDHDHKGSLLDTALRSADTQ 410 Query: 405 ---TYRNSFVAVREVVPIVPAAIT---ERL--KPTARGTQTALVTGLPDAAVTTDRNHRV 456 YRN F A+R +P P + ERL KP A G Q+A+V G AV TDR++R+ Sbjct: 411 ARPVYRNRFEAIRNKIPYRPLLVDAQGERLYPKPQAHGQQSAVVVGAQGQAVHTDRDNRI 470 Query: 457 KVQFHWQRGKSPNPGGLRETGNLDDKDGNAPGNDASGTWVRVAEA---QSGPNWGSQFTP 513 +VQFHWQRG+ + G + DD G AP N+ +GTWVRV +G NWG Q P Sbjct: 471 RVQFHWQRGERSHSG--LSSPTPDDHVG-APANEQAGTWVRVLAGLAPTAGANWGGQAVP 527 Query: 514 RIGSEVLIDFIEGDIDRPVVVAQLYNGNDV-------------------PPFPAGAESDA 554 R+G EVLIDFIEGDIDRPVV+ LYNG V P + G+ Sbjct: 528 RVGQEVLIDFIEGDIDRPVVIGTLYNGRGVDNAQGNQAGQGAGSATGNAPAWFPGSSGAH 587 Query: 555 NHAGTISGWHSTA-----HDGSGFNQWVVDDTQSQLRMRLA----SSQGKSELNLGHLID 605 NHA +SG + A G G+NQ V DD+ Q R L + G SELNLG L Sbjct: 588 NHAAVLSGIKTQALSASQSGGGGYNQLVFDDSPGQARAALQQHADAHDGASELNLGLLRQ 647 Query: 606 QADTGAQRGSYRGQGFELRTDAWGVVRGAEGLLISSTARPVAGASVTSTQMDAHEAVAQL 665 Q D QR + GQGFEL+T +R +GLL+S+ S Q+D + ++QL Sbjct: 648 QTDN--QRLATTGQGFELKTLYSAALRAGQGLLVSTE-------KSISAQLDMTQGLSQL 698 Query: 666 KGAQQLAQTMGEAATQQQALHSAD-------ALQAKTDFISVIDPQDQGKHPASVNGQDA 718 + Q Q + E A + A + A++A + I V+ +S + Sbjct: 699 SESAQKQQQLAETAQKHNARLEGESDAAKLPAVEAMGESIEVLKATQSASTGSSGSDGQG 758 Query: 719 FKSQAGSRESDSSQPVEKFSKAAVLMESPSNVNWASAASTVLYAGANLHWTTQGDTHWTA 778 + + + Q ++ S A + +P++ A+ ++ + AG +++ QG+ H+ + Sbjct: 759 SSATTATTAFSAPQ-LQLSSPAGIAAVTPASAIIAAGVTSSVTAGKDINQIAQGNLHYLS 817 Query: 779 ADTASL-AAGKAA--TLFAHDGGIQAFAGNGPVSLQAHTDALEILADKDVSVISVNEGIE 835 SL GKA+ + + G+ A G VS+Q+ + + K ++V SV + + Sbjct: 818 KSGISLFTYGKASNGSKPNQETGMALHAAAGKVSVQSQAGQTLLTSAKQLTVASVGKDVS 877 Query: 836 IKARQKIVLQAGQASVTLEGGNITFACPGTFSVK 869 + +Q + L A A + LEGGNI PG + Sbjct: 878 VAGKQHVQLAAQGAWLRLEGGNIEVHGPGAMEFR 911 >gi|300310274|ref|YP_003774366.1| VGR-related protein [Herbaspirillum seropedicae SmR1] Length = 928 Score = 359 bits (922), Expect = e-100, Method: Compositional matrix adjust. Identities = 279/944 (29%), Positives = 451/944 (47%), Gaps = 107/944 (11%) Query: 3 LPFP---------DSLSSVINQLFGPGLSQHARLITLASAQEAGLPESLVVERFHGQESV 53 +PFP D++ + ++ L + Q R++ L S P+ L+ +R G E + Sbjct: 1 MPFPVCLPPSSAMDNVLTTLSALADTFVGQEKRILKLDSVLG---PDVLLPQRMVGSERL 57 Query: 54 NDNFQFEIDALSVSTDLDLKQFIGTELTLRLLQADGSRRA-WHGYCTQASWLGADGGLAR 112 + + ID +S D++LK+ I +TL LQ DGS A HGY A LG+DG LA Sbjct: 58 GRGYDYTIDLVSTRDDIELKKLIAQPVTL-WLQQDGSDYAPLHGYVHTARRLGSDGQLAS 116 Query: 113 YRLRLESFLAFLDRRRDSFLFQDMSVTDIASAVLKE--YPQANFALDVTQTLTKRDICTQ 170 +++ + +L FL R+D+ ++QD DI + V + Y + N+ ++ R CTQ Sbjct: 117 FQIGMAPWLHFLKYRKDARIWQDSKADDILADVFDQHAYARGNYRFEIVTPALPRSYCTQ 176 Query: 171 YRESDFAFLRRILASEGLNFRFEHQQEGEQGQASGQQQARHKLVIFDREAKAPDLPGGDT 230 Y E+D+ F++R++ EG E + +G SG H LVI D +A P Sbjct: 177 Y-ETDWHFVQRLMEEEGWYAYHEQKPDG-----SG-----HVLVITDNTDQAK--PLAPE 223 Query: 231 RIRFHRIAATEASDAITDFSAVRSVRSNAVALASWHPEKISSPS----AEENSSLDAGEV 286 ++ FH + + I +SA R + S +A + + SP +E + G + Sbjct: 224 QLAFHGAGTQDEVNRILHWSASRGLASTRLATRT---DDYKSPGDQKQTQERVLPEHGAL 280 Query: 287 PA-LAVYDGTGQQDFADQEAAATHAQLMLQALEMQNKRFEGAGAARQLSAGTQFTLSQHE 345 P L VY+ +G +A Q+ A+L ++ E KRF G AR L+AG FTL+ H Sbjct: 281 PGELEVYEYSGPYSYAKQDDGDRQARLRVEQWESSMKRFMGVSGARTLAAGRWFTLTDHP 340 Query: 346 RH---PEGENRFKLLSVRHSARNNFDSNITQILEQFIPASLANLFGKTPSSGGLSDDDL- 401 H + +++F L++V NN + T + P SL +S G S+DD Sbjct: 341 AHRGDSKQDSQFMLIAVEWFIENNLPLSGT---ARDFPGSLKPQLDAFKASMGRSNDDAG 397 Query: 402 ---KAGTYRNSFVAVREVVPIVPAAITERLKPTARGTQTALVTGLPDAAVTTDRNHRVKV 458 + G N F R +P + + KP QTA+V G V TD+ +RVKV Sbjct: 398 GNARTGHCFNRFEVQRRKLPY--RSPFDHTKPVMH-PQTAVVVGPQGEEVFTDKLNRVKV 454 Query: 459 QFHWQRGKSPNPGGLRETGNLDDKDGNAPGNDASGTWVRVAEAQSGPNWGSQFTPRIGSE 518 QF W R PG++ + WVRV+ +G NWG PR+G E Sbjct: 455 QFRWDRIN--------------------PGDEKASCWVRVSYPNAGENWGEVKVPRVGQE 494 Query: 519 VLIDFIEGDIDRPVVVAQLYNGNDVPPFPAGAESDANHAGTISGWHSTAHDGSGFNQWVV 578 ++I F+ GD DRPV +L+N P + + G +SG S G+GFNQ V+ Sbjct: 495 LIISFLNGDPDRPVATGRLFNQEQPPQW--------HTDGRLSGLKSKEFGGNGFNQLVM 546 Query: 579 DDTQSQLRMRLASSQGKSELNLGHLIDQADTGAQRGSYRGQGFELRTDAWGVVRGAEGLL 638 DDT SQ R+ L SSQ ++LNLG+L+ QAD +R ++ G GF L TD +G V +GL Sbjct: 547 DDTTSQNRVHLYSSQSNAQLNLGYLVSQADN--ERRNFYGSGFALSTDDYGAVVTQKGLY 604 Query: 639 ISSTARPVAGASVTSTQMDAHEAVAQLKGAQQLAQTMGEAATQQQALHSADALQAKTDFI 698 +SS RP TQ+DA EA + +K + LA+ + ++A++ A A A + DF+ Sbjct: 605 LSSYGRP----GPQGTQLDASEATSLMKASADLARGLSDSASRAGA--EALAQDSLKDFV 658 Query: 699 SVIDPQDQGKHPASVNGQDAFKSQAGSRESDSSQPVEKFSKAAVLMESPSNVNWASAAST 758 + + G+ S N +F K ++M +P+ + A+ T Sbjct: 659 DATEDKYSGQGQGSAN---------------------RFKKPLLMMAAPAGIGLATDQGT 697 Query: 759 VLYAGANLHWTTQGDTHWTAADTASLAAGKAATLFAHDGGIQAFAGNGPVSLQAHTDALE 818 +++ T+ DT + + + +LFA + G++ FA G V +QA +D L+ Sbjct: 698 QVHSAQETTLTSGKDTSIASGKSLLATVKEKISLFAQNAGMKLFAAKGKVEIQAQSDDLD 757 Query: 819 ILADKDVSVISVNEGIEIKARQKIVLQAGQASVTLEGGNITFACPGTFSVKGATHAFPGG 878 ++A+K ++S + +EI A+ ++++ AG + + + IT PG + K + H+ PG Sbjct: 758 LIAEKVARLLSTSGRVEIHAKDEVMISAGGSFIQINSAGITQGTPGKWEAKASLHSMPGP 817 Query: 879 ASVSPDLMALPDTKYKLFDEAFVVKDPNGTPLSDIPYRIKSSAG 922 AS + + + ++ + D F G PL+ Y+ S G Sbjct: 818 ASQNFVMPHVQKSELQPSDMEFRHLTDWGEPLAGAAYKAILSDG 861 >gi|300310098|ref|YP_003774190.1| VGR-related protein [Herbaspirillum seropedicae SmR1] Length = 982 Score = 331 bits (849), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 317/1014 (31%), Positives = 461/1014 (45%), Gaps = 176/1014 (17%) Query: 9 LSSVINQLFGPGLSQHARLITLASAQEAGLPESLVVERFHGQESVNDNFQFEIDALSVST 68 +S ++ QL + +RL +L+ A E L+VE F E ++ E+ LS+ Sbjct: 1 MSDLLTQLMQ--FTGASRLYSLSLGDAAPAGE-LLVEAFAASEGLHAVGLREVIVLSLDA 57 Query: 69 DLDLKQFIGTELTLRLLQADGSRRAWHGYCTQASWLGADGGLARYRLRLESFLAFLDRRR 128 L LK IG TL +DGSR + G +A+ LG++GGLARYRLR+ ++ L + Sbjct: 58 GLRLKSLIGQRATLVTTLSDGSRTQFSGLVNEAAKLGSEGGLARYRLRIVPWVWLLSQSH 117 Query: 129 DSFLFQDMSVTDIASAVLKEY-PQANFALD-----VTQTLTKRDICTQYRESDFAFLRRI 182 +S ++QD +V DI V +Y P A + Q + R QYRES+ AF+ R+ Sbjct: 118 NSRVWQDKTVIDIVEDVFADYAPHAAWTWTDEVAPFMQQVQPRSYTIQYRESNLAFVSRL 177 Query: 183 LASEGLNFRFEHQQEGEQGQASGQQQARHKLVIFDREAKAP-----DL----PGGDTRIR 233 LA+EGL++R E + G H+LV+F ++ +P DL P G + IR Sbjct: 178 LAAEGLSWRVEESADAASG---------HRLVLF-ADSTSPRAFPEDLTSTSPLGGSGIR 227 Query: 234 FHRIAATEASDAITDFSAVRSVRSNAVALASWHPEK-----ISSPSAEENSSLDAGEVPA 288 FH A E D+I +A R+++ + L S+ + S P+ E DA P Sbjct: 228 FHAGTAREEQDSIQALAARRALQPASFTLLSYDYKSKQAVATSLPTRHEFGGKDA---PR 284 Query: 289 LAVYDGTGQQDFADQEAAATHAQLMLQALEMQNKRFEGAGAARQLSAGTQFTLSQHERHP 348 L YD G + D A +A+L L+A E +NK ++ R L GT+FTL+ P Sbjct: 285 LESYDSPGLYAYTDAAEADHYARLHLEASEARNKLWQARSTVRTLRPGTRFTLADG---P 341 Query: 349 EG--------ENRFKLLSVRHSARNNFDSNITQILEQF---IPASLANLF-----GKTPS 392 G ++ +LSV NN + + L + IP L + G++ Sbjct: 342 LGLSAAQDGAPRQYAVLSVMSVGVNNLPKDAAEGLAELFGPIPPLLEDCVAACEEGQSLL 401 Query: 393 SGGLSDDDLK-------AGT--------YRNSFVAVREVV---PIVPAAITERL--KPTA 432 G D L+ AG Y N+F A+R V P++ RL + TA Sbjct: 402 HGQSGPDSLQLLGQTDIAGVIAQARQLGYANAFEAIRADVIWRPVLADGTGLRLHARATA 461 Query: 433 RGTQTALVTGLPDAA--------VTTDRNHRVKVQFHWQRGKSPNPGGLRETGNLDDKDG 484 RG+Q+A+V G P + DR RV+++FHWQ G++ Sbjct: 462 RGSQSAIVVG-PQGETSASSAGEIHCDRLGRVRIRFHWQ-GRN----------------- 502 Query: 485 NAPGNDASGT-WVRVAEAQSGPNWGSQFTPRIGSEVLIDFIEGDIDRPVVVAQLYNGND- 542 NDA+ T WVRVA+ + G QF PRIG EVL+ FIE DIDRPV+V LYNG Sbjct: 503 ----NDAAATCWVRVAQRAASGGAGMQFLPRIGQEVLVQFIEDDIDRPVIVGALYNGRGE 558 Query: 543 --VPPFPAG----AESD-------------ANHAGTISG-----WHSTAHD--------- 569 P P G A SD A+ G ++G WH + D Sbjct: 559 GAAAPTPGGDTAQAGSDDPARAFTSATDLQASGQGNLAGGNAPTWHGGSQDSDGHGNTAA 618 Query: 570 ----------GSGFNQWVVDDTQSQLRMRLASSQGKSELNLGHLIDQADTGAQRGSYRGQ 619 GSG+NQ V DDT +Q R++L ++Q SELNLGHLI AD RGS+RG Sbjct: 619 QWGIRSKEFGGSGYNQIVFDDTDAQGRIQLKTTQSGSELNLGHLIHTADN--YRGSFRGT 676 Query: 620 GFELRTDAWGVVRGAEGLLISSTARPVAGASVTSTQMDAHEAVAQLKGAQQLAQTMGEAA 679 G ELRTDA+G +R G+L SS + A+ D +A LK A L +T EA Sbjct: 677 GAELRTDAYGALRAGGGILFSSY-KIEQNAASRDPAGDNVGGMALLKQAALLGKTFNEAT 735 Query: 680 TQQQALHSADAL---QAKTDFIS-------VIDPQDQGKHPASVNGQDAFKSQAGSRESD 729 + + A L QA I+ I G S A + A ++ + Sbjct: 736 LTHKTVGLASHLGPTQASASTINDSAAPLEAIRVAASGMVDGSPENSGADVAAANTQTGE 795 Query: 730 SSQPVEKFSKAAVL-MESPSNVNWASAASTVLYAGANLHWTTQGDTHWTAADTASLAAGK 788 S P S AA++ + + + + L G ++ + D+ A + L +G+ Sbjct: 796 SKLP---HSTAALIGIAAKEGLGAVAGQHMQLANGETVNLLSGADSQQVAGNQYRLRSGQ 852 Query: 789 AATLF-------AHDGGIQAFAGNGPVSLQAHTDALEILADKDVSVISVNEGIEIKARQK 841 A + G+Q A + +QA D L + A V VIS N G++ A +K Sbjct: 853 ALGVLAGAMAAGEGGTGLQMIAAQKNIDVQAQADGLTVQARDQVRVISANAGVDWAAAKK 912 Query: 842 IVLQ-AGQASVTLEGGNITFACPGTFSVKGATHAFPGGASVSPDLMALPDTKYK 894 I L AG A++T+EGGNIT CPG ++ A F G S + L +P++ K Sbjct: 913 ITLSTAGGANITIEGGNITVQCPGKLTIHAAQKLFAGPVSKTLPLPQMPNSVCK 966 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.314 0.129 0.373 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 3,044,521 Number of extensions: 132472 Number of successful extensions: 522 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 449 Number of HSP's successfully gapped: 9 Length of query: 959 Length of database: 1,619,870 Length adjustment: 94 Effective length of query: 865 Effective length of database: 1,174,780 Effective search space: 1016184700 Effective search space used: 1016184700 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 135 (56.6 bits)