BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0024.0044.p
         (307 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310797|ref|YP_003774889.1| hypothetical protein Hsero_1465...   426   e-121

>gi|300310797|ref|YP_003774889.1| hypothetical protein Hsero_1465
           [Herbaspirillum seropedicae SmR1]
          Length = 334

 Score =  426 bits (1096), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 207/307 (67%), Positives = 238/307 (77%)

Query: 1   MWSMIQEMSTKRLCKLHGRNEGSIIPVYSDRARRIAATYARFYLEKEDYGDPAKKGRFYW 60
           MWSMIQ+MSTKRLC LHGRNEGSIIPV+SDRARRI+ATYARFYLEKEDYG+P KKGRFYW
Sbjct: 28  MWSMIQQMSTKRLCTLHGRNEGSIIPVFSDRARRISATYARFYLEKEDYGEPTKKGRFYW 87

Query: 61  MALGAFASKTVACSLDDIRVATIDTVFKGLAKGNLWLFYDISGWHWYYTRFGTSFDLCIS 120
           MALGAFASKTVACSLDD+RV  ID VFKGLAKGNLWLFYDISGWHWYYTRF  SFD C+S
Sbjct: 88  MALGAFASKTVACSLDDLRVPIIDPVFKGLAKGNLWLFYDISGWHWYYTRFRNSFDQCVS 147

Query: 121 QRDASAYITAVKEQVTNYPWKDEALSKINNMRTFDKIQAGFALVKQIEEESDRVERRKLQ 180
            RDASAYI  VK+QV NYPW DEAL KI NM   D I   F LVKQIE      ++ +L+
Sbjct: 148 CRDASAYIKPVKDQVANYPWMDEALPKIANMHRHDHIVEAFDLVKQIESSRPGEDQERLK 207

Query: 181 WDHLIKIAEHEQYVILQPLIYADKDFSDWVAVQRWRLVNLVSPELRLAFTSACDSKQPLK 240
           + HLI IA HEQ VILQPLIY D  F+ WV VQR R +  +SP+L++AFTSACD      
Sbjct: 208 YQHLIAIANHEQGVILQPLIYDDACFARWVWVQRLRGIRSLSPKLQMAFTSACDIDDQKL 267

Query: 241 KSVAPKGTILEDYKSRMDWITQAADRFHQLMGQERAYMEQELSTIAGWVHMDESLDLENR 300
           KS APK T+LED++SRM WIT  AD FH LM ++ AYME +L+ +AGWV+MD+  + +  
Sbjct: 268 KSEAPKETVLEDFQSRMQWITSVADIFHDLMQRQGAYMESQLNAMAGWVNMDQMQNYQPT 327

Query: 301 PMMLPPI 307
            M   P+
Sbjct: 328 YMFGAPL 334


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.134    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 938,251
Number of extensions: 36233
Number of successful extensions: 95
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 95
Number of HSP's successfully gapped: 1
Length of query: 307
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 222
Effective length of database: 1,217,395
Effective search space: 270261690
Effective search space used: 270261690
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)