BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0024.0043.p
         (139 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311003|ref|YP_003775095.1| hypothetical protein Hsero_1674...   120   4e-29
gi|300310796|ref|YP_003774888.1| hypothetical protein Hsero_1464...   115   1e-27
gi|300312218|ref|YP_003776310.1| hypothetical protein Hsero_2913...    80   7e-17

>gi|300311003|ref|YP_003775095.1| hypothetical protein Hsero_1674
           [Herbaspirillum seropedicae SmR1]
          Length = 259

 Score =  120 bits (301), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 62/135 (45%), Positives = 83/135 (61%), Gaps = 1/135 (0%)

Query: 2   IPISRPRLKGEQALAYALK-NPGYPLDPSHDLSLAQWMKLPDGTPWLFYADHVFLEIKLY 60
           I +S PRLKG+QAL Y  K NP Y LDP + LSL QWM L     W  Y+DH +L++ + 
Sbjct: 118 IRLSEPRLKGKQALDYRQKENPIYSLDPDYVLSLEQWMTLDTRATWSLYSDHAYLDVSIT 177

Query: 61  RDPNRLDTDKRGAYFVTYSLTAQDAYLRGYVDDEKLDNWKMEFSKELPALKQARERKEAQ 120
           RDP++ D  K GAYFV Y+L + +   R  V   K  +WK E    LP L ++R+  E  
Sbjct: 178 RDPSKTDVTKPGAYFVEYALKSDNEKWRSVVGPTKRLHWKTELPAVLPQLAKSRQAAEET 237

Query: 121 LKNDNVTIDQAYQDP 135
           LK +N+TID+ Y+DP
Sbjct: 238 LKKENITIDETYRDP 252


>gi|300310796|ref|YP_003774888.1| hypothetical protein Hsero_1464
           [Herbaspirillum seropedicae SmR1]
          Length = 254

 Score =  115 bits (288), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 59/131 (45%), Positives = 78/131 (59%)

Query: 7   PRLKGEQALAYALKNPGYPLDPSHDLSLAQWMKLPDGTPWLFYADHVFLEIKLYRDPNRL 66
           PRLKG  AL YAL +  Y LDP + LSL +WM +PD T W F  ++ +L + L RDP R 
Sbjct: 123 PRLKGSTALRYALSSRTYALDPDYPLSLQEWMSMPDDTMWRFQLENAYLMLTLTRDPQRK 182

Query: 67  DTDKRGAYFVTYSLTAQDAYLRGYVDDEKLDNWKMEFSKELPALKQARERKEAQLKNDNV 126
           D +K+GAYFV  SL   +   R  V   +  +W+    +EL  LKQ RER E  L+   V
Sbjct: 183 DVNKKGAYFVKLSLNGANEEARRIVGPARRADWQAALPEELKLLKQDRERAEQVLRQQGV 242

Query: 127 TIDQAYQDPAV 137
            ID++YQDP +
Sbjct: 243 AIDESYQDPKL 253


>gi|300312218|ref|YP_003776310.1| hypothetical protein Hsero_2913
           [Herbaspirillum seropedicae SmR1]
          Length = 284

 Score = 80.1 bits (196), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 43/130 (33%), Positives = 68/130 (52%), Gaps = 1/130 (0%)

Query: 7   PRLKGEQALAYAL-KNPGYPLDPSHDLSLAQWMKLPDGTPWLFYADHVFLEIKLYRDPNR 65
           PRL G++   Y   ++P   L+  +  +L +WM+L D + W FYAD VFL + + RD   
Sbjct: 150 PRLTGKERFDYVTGQSPASGLNIDYVPTLDEWMRLEDLSHWSFYADGVFLTVTMQRDQGA 209

Query: 66  LDTDKRGAYFVTYSLTAQDAYLRGYVDDEKLDNWKMEFSKELPALKQARERKEAQLKNDN 125
           LD  + G Y +  +L  ++   R +V  +   NW+ E      AL + R ++EAQ     
Sbjct: 210 LDVSRPGHYILVLNLMGENEGFRAFVPPKARTNWRNELPSLWKALNERRTQREAQALVAG 269

Query: 126 VTIDQAYQDP 135
             I+ +YQDP
Sbjct: 270 KKINTSYQDP 279


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.136    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 473,358
Number of extensions: 18583
Number of successful extensions: 46
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 45
Number of HSP's successfully gapped: 3
Length of query: 139
Length of database: 1,619,870
Length adjustment: 76
Effective length of query: 63
Effective length of database: 1,260,010
Effective search space: 79380630
Effective search space used: 79380630
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)