BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0024.0042.p
         (738 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312801|ref|YP_003776893.1| hypothetical protein Hsero_3506...  1429   0.0  

>gi|300312801|ref|YP_003776893.1| hypothetical protein Hsero_3506
           [Herbaspirillum seropedicae SmR1]
          Length = 736

 Score = 1429 bits (3700), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 688/724 (95%), Positives = 707/724 (97%)

Query: 1   MEIKVNFLDKLRLEAKFDDFTVIADQPIRYKGDGSAPGPFDYFLASSALCAAYFVKLYCN 60
           MEIKVNFLDKLRLEAKFDDFTVIADQPIRYKGDGSAPGPFDYFLASSALCAAYFVKLYCN
Sbjct: 1   MEIKVNFLDKLRLEAKFDDFTVIADQPIRYKGDGSAPGPFDYFLASSALCAAYFVKLYCN 60

Query: 61  TRNISTENIRLSQNNIVDPENRYQQTFKIQVELPPDIEEADRRGILRSIERCTVKKVVQQ 120
           TRNISTENIRLSQNNIVDPENRYQQTFKIQVELP DIEEADRRGILRSIERCTVKKVVQQ
Sbjct: 61  TRNISTENIRLSQNNIVDPENRYQQTFKIQVELPADIEEADRRGILRSIERCTVKKVVQQ 120

Query: 121 GPEFIIEEVESLDADAQSLLTLKPEAGTSTHILGKDLPLEQTIANMSGLLADLGIKIEIA 180
           GPEF+IEEVESLDADAQSLLTLKPEAG STHILGKDLPLEQTIANMSGLLA+LGIKIEIA
Sbjct: 121 GPEFVIEEVESLDADAQSLLTLKPEAGVSTHILGKDLPLEQTIANMSGLLAELGIKIEIA 180

Query: 181 SWRNIIPNVWSLHIRDAHSPMCFTNGKGATKESALASALGEYIERISNNHFYAGSYWGEE 240
           SWRNIIPNVWSLHIRDAHSPMCFTNGKGATKESALASALGEYIERISNNHFYAGSYWGE+
Sbjct: 181 SWRNIIPNVWSLHIRDAHSPMCFTNGKGATKESALASALGEYIERISNNHFYAGSYWGED 240

Query: 241 IANAEFVHYPNERWFKPGRGDKLPKEILDTYCLEIYNPDGELRASHLVDTNSGNAQRGIC 300
           IANAEFVHYPNERWFKPGRGDKLPKEILD YCL IYN DGELRASHLVDTNSGNA+RGIC
Sbjct: 241 IANAEFVHYPNERWFKPGRGDKLPKEILDAYCLGIYNADGELRASHLVDTNSGNAERGIC 300

Query: 301 SLPYVRQSDGEVVYFPSNLVENLFVSNGMSAGNTLPEAQVQCLSEIFERAVKREVLEGEI 360
           SLPYVRQSDGEVVYFPSNLVENLFVSNGMSAGNTLPEAQVQCLSEIFERAVKRE+LEGEI
Sbjct: 301 SLPYVRQSDGEVVYFPSNLVENLFVSNGMSAGNTLPEAQVQCLSEIFERAVKREILEGEI 360

Query: 361 CLPDVPQEVLAKYPGIVAGIKGLEEQGFPVLVKDASLGGVYPVMCVTLMNPRTGGVFASF 420
           CLPDVPQEVLAKYPGIVAGI+GLEEQGFPVLVKDASLGGVYPVMCVTLMNPRTGGVFASF
Sbjct: 361 CLPDVPQEVLAKYPGIVAGIQGLEEQGFPVLVKDASLGGVYPVMCVTLMNPRTGGVFASF 420

Query: 421 GAHPSFEVALERSLTELLQGRSFEGLNDLPQPTFESNAVTEPNNFVEHFIDSSGIVSWRF 480
           GAHPSFEVALERSLTELLQGRSFEGLNDLPQPTFESNAVTEPNNFVEHFIDSSGIVSWRF
Sbjct: 421 GAHPSFEVALERSLTELLQGRSFEGLNDLPQPTFESNAVTEPNNFVEHFIDSSGIVSWRF 480

Query: 481 FSAKADYEFVEWDFSSQGEDSNTEEAATLFGILEEMGKEAYVAIYDQLGATACRILVPGY 540
           FSAK  YEFVEWDFSSQG+ +N EEAATLF ILE+MGKEAYVA+YDQLGATACRILVPGY
Sbjct: 481 FSAKPHYEFVEWDFSSQGDHANAEEAATLFAILEDMGKEAYVAVYDQLGATACRILVPGY 540

Query: 541 SEVYPVEDLIWDNTNKALLFREDVLNLHRLDDKALAALLDRLENNELDDYSDIATLIGID 600
           SEVYPVEDLIWDNTNKALLFR D+LNLHRLDD+ALAALLDRLENNELD+YSDIATLIGID
Sbjct: 541 SEVYPVEDLIWDNTNKALLFRADILNLHRLDDEALAALLDRLENNELDEYSDIATLIGID 600

Query: 601 FDENTEWGQLTVLELKLLINLALRQFEEAHDLVGAFLQYNDNSVERGLFYQALNVVLEVE 660
           FDENT WGQLTVLELKLLI+LAL+QFEEAH+LVGAFLQYNDNSVERGLFYQALNVVLEVE
Sbjct: 601 FDENTVWGQLTVLELKLLIHLALQQFEEAHELVGAFLQYNDNSVERGLFYQALNVVLEVE 660

Query: 661 LDDELELSDYETNFRRMFGDARMDAAIGSVNGSVRFFGLTPTSMTLEGLDRHQRLLDSYR 720
           LD+EL L DYETNFRRMFG+ RMDAAIGS+ GSVRFFGLTPTSM LEGLDRHQRLLDSYR
Sbjct: 661 LDEELALEDYETNFRRMFGNERMDAAIGSITGSVRFFGLTPTSMKLEGLDRHQRLLDSYR 720

Query: 721 KLHK 724
           KLHK
Sbjct: 721 KLHK 724


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.136    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,159,129
Number of extensions: 88269
Number of successful extensions: 223
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 223
Number of HSP's successfully gapped: 1
Length of query: 738
Length of database: 1,619,870
Length adjustment: 92
Effective length of query: 646
Effective length of database: 1,184,250
Effective search space: 765025500
Effective search space used: 765025500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 134 (56.2 bits)