BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0024.0040.p
         (202 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313332|ref|YP_003777424.1| stringent starvation transcript...   412   e-117
gi|300310452|ref|YP_003774544.1| maleylacetoacetate isomerase [H...    55   3e-09

>gi|300313332|ref|YP_003777424.1| stringent starvation transcription
           regulator A protein [Herbaspirillum seropedicae SmR1]
          Length = 203

 Score =  412 bits (1060), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 200/202 (99%), Positives = 202/202 (100%)

Query: 1   MVLYSGTTCPFSQRCRLVLFEKGMDFEIRDVDLFNKPEDISVMNPYGQVPILVERDLVLY 60
           MVLYSGTTCPFSQRCRLVLFEKGMDFEIRDVDLFNKPEDISVMNPYGQVPILVERDLVLY
Sbjct: 2   MVLYSGTTCPFSQRCRLVLFEKGMDFEIRDVDLFNKPEDISVMNPYGQVPILVERDLVLY 61

Query: 61  ESNIINEYIDERFPHPQLMPADPLMRARARLMLFNFEKELFVHVHTLENEKSKAAEKNQE 120
           ESNIINEYIDERFPHPQLMPADPLMRARARLMLFNFEKELFVHVHTLENEKSKAAEK+QE
Sbjct: 62  ESNIINEYIDERFPHPQLMPADPLMRARARLMLFNFEKELFVHVHTLENEKSKAAEKSQE 121

Query: 121 KARHEIRDRLTQLAPLFLKNKYMLGDEFSMLDVALAPLLWRLDHYGIELSKTAAPLMKYA 180
           KAR+EIRDRLTQLAPLFLKNKYMLGDEFSMLDVALAPLLWRLDHYGIELSKTAAPLMKYA
Sbjct: 122 KARNEIRDRLTQLAPLFLKNKYMLGDEFSMLDVALAPLLWRLDHYGIELSKTAAPLMKYA 181

Query: 181 ERIFSRPAYIEALTPSEKVMRR 202
           ERIFSRPAYIEALTPSEKVMRR
Sbjct: 182 ERIFSRPAYIEALTPSEKVMRR 203


>gi|300310452|ref|YP_003774544.1| maleylacetoacetate isomerase
           [Herbaspirillum seropedicae SmR1]
          Length = 215

 Score = 55.5 bits (132), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 77/187 (41%), Gaps = 22/187 (11%)

Query: 2   VLYSGTTCPFSQRCRLVLFEKGMDFEIRDVDLFNKPED-----ISVMNPYGQVPILVERD 56
            LYS      S R R+ L  K + +E   V L N+  +      + +NP+  VP+L E  
Sbjct: 3   TLYSYFRSSASYRVRIALHLKDLPYETVPVHLLNQGGEQLLPAFTEINPHALVPVLAEEG 62

Query: 57  LVLYESNIINEYIDERFPHPQLMPADPLMRARARLMLFNFEKELFVHVHTLEN------- 109
             + +S  + E ++ER P P L+P D   RA  R +      +    +H L N       
Sbjct: 63  HYVSQSLAMLELLEERHPTPSLLPGDAFQRAHIRALSLAIACD----IHPLNNLRVLKYL 118

Query: 110 --EKSKAAEKNQEKARHEIRDRLT----QLAPLFLKNKYMLGDEFSMLDVALAPLLWRLD 163
             E     E+      H I    T    QLA    +  + +GD  +M D  L P ++   
Sbjct: 119 KRELGMDDERKNAWIAHWINLGFTALERQLAADTTRGHFCVGDAPTMADCCLVPQIFNAR 178

Query: 164 HYGIELS 170
            + ++++
Sbjct: 179 RFEVDMA 185


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.139    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 589,066
Number of extensions: 22449
Number of successful extensions: 69
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 71
Number of HSP's successfully gapped: 3
Length of query: 202
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 121
Effective length of database: 1,236,335
Effective search space: 149596535
Effective search space used: 149596535
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 128 (53.9 bits)