BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0024.0024.p
         (265 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313350|ref|YP_003777442.1| phosphoribosylformimino-5-amino...   531   e-152
gi|300313349|ref|YP_003777441.1| imidazole glycerol-phosphate sy...   100   2e-22
gi|300313489|ref|YP_003777581.1| imidazoleglycerol-phosphate syn...    67   2e-12

>gi|300313350|ref|YP_003777442.1|
           phosphoribosylformimino-5-aminoimidazole carboxamide
           ribonucleotide (ProFAR) isomerase [Herbaspirillum
           seropedicae SmR1]
          Length = 265

 Score =  531 bits (1367), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 262/265 (98%), Positives = 265/265 (100%)

Query: 1   MLLIPAIDLKDGHCVRLKQGDMEQATVFSEDPAEMALHWLKQGARRLHLVDLNGAFAGKP 60
           MLLIPAIDLKDGHCVRLKQGDM+QATVFSEDPAEMALHWLKQGARRLHLVDLNGAFAGKP
Sbjct: 1   MLLIPAIDLKDGHCVRLKQGDMDQATVFSEDPAEMALHWLKQGARRLHLVDLNGAFAGKP 60

Query: 61  KNEAAVKAILKAVASFAEENDVEEIPVQLGGGIRDLDTIERYLDDGLSYIIIGTAAVKNP 120
           KNEAAVKAILKAVASFAEEN+VEEIPVQLGGGIRDLDTIERYLDDGLSYIIIGTAAVKNP
Sbjct: 61  KNEAAVKAILKAVASFAEENEVEEIPVQLGGGIRDLDTIERYLDDGLSYIIIGTAAVKNP 120

Query: 121 GFLHDACSAFPGQIIVGLDAKDGKVATDGWSKLSGHEVVDLAQKFEGYGCEAIVYTDIGR 180
           GFLHDACSAFPGQIIVGLDAKDGKVATDGWSKLSGHEVVDLAQKFEGYGCEAIVYTDIGR
Sbjct: 121 GFLHDACSAFPGQIIVGLDAKDGKVATDGWSKLSGHEVVDLAQKFEGYGCEAIVYTDIGR 180

Query: 181 DGMMGGVNIEATVRLAQAVTIPIIASGGVHHVGDVEALCRVEDEGIEAVICGRSIYEGTL 240
           DGMMGGVNIEATVRLAQAVTIPIIASGGVH+VGDVEALCRVEDEGIEAVICGRSIYEGTL
Sbjct: 181 DGMMGGVNIEATVRLAQAVTIPIIASGGVHNVGDVEALCRVEDEGIEAVICGRSIYEGTL 240

Query: 241 DLRSGQDRADELTRELEANRLSGSK 265
           DLRSGQDRADELTRELEANRLSGSK
Sbjct: 241 DLRSGQDRADELTRELEANRLSGSK 265


>gi|300313349|ref|YP_003777441.1| imidazole glycerol-phosphate
           synthase [Herbaspirillum seropedicae SmR1]
          Length = 254

 Score =  100 bits (248), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/224 (33%), Positives = 119/224 (53%), Gaps = 29/224 (12%)

Query: 3   LIPAIDLKDGHCVRLKQGDMEQATVFSE-----DPAEMALHWLKQGARRLHLVDLNGAFA 57
           +IP +D+  G  V+           F E     DP E+A  + +QGA  L  +D+  +  
Sbjct: 7   IIPCLDVTAGRVVK--------GVNFLELRDAGDPVEIARRYDEQGADELTFLDITASSD 58

Query: 58  GKPKNEAAVKAILKAVASFAEENDVEEIPVQLGGGIRDLDTIERYLDDGLSYIIIGTAAV 117
           G+      +  I++AVAS         IP+ +GGG+R ++ + R L+ G   + I T+AV
Sbjct: 59  GRD----LILDIIEAVASQVF------IPLTVGGGVRAVEDVRRLLNAGADKVGINTSAV 108

Query: 118 KNPGFLHDACSAFPGQ-IIVGLDAK---DGK--VATDGWSKLSGHEVVDLAQKFEGYGCE 171
            NP  + DA S +  Q I+V +DAK   DGK  V T G  K +G + V+ A+K    G  
Sbjct: 109 TNPQLVADAASKYGSQCIVVAIDAKRAGDGKWEVYTHGGRKATGLDAVEWARKMAQLGAG 168

Query: 172 AIVYTDIGRDGMMGGVNIEATVRLAQAVTIPIIASGGVHHVGDV 215
            I+ T + RDG   G +++ T  +++AV+IP+IASGGV  + D+
Sbjct: 169 EILLTSMDRDGTKSGFDLDLTRAVSEAVSIPVIASGGVGGLQDL 212


>gi|300313489|ref|YP_003777581.1| imidazoleglycerol-phosphate
           synthase [Herbaspirillum seropedicae SmR1]
          Length = 253

 Score = 66.6 bits (161), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 75/157 (47%), Gaps = 8/157 (5%)

Query: 85  IPVQLGGGIRDLDTIERYLDDGLSYIIIGTAAVKNPGFLHDACSAFPGQ-IIVGLDAKDG 143
           +P+  GGGIR LD        G   + + T A++NP  + +  + +  Q ++V +D K G
Sbjct: 75  MPLGYGGGIRSLDDARSVFSIGFEKVAVNTHALENPSLISEIATEYGSQAVVVSVDVKGG 134

Query: 144 -----KVATDGWSKLSGHEVVDLAQKFEGYGCEAIVYTDIGRDGMMGGVNIEATVRLAQA 198
                 V +      +G + V  AQ+ E  G   +  T I R+G   G +I+   ++  A
Sbjct: 135 VLGGQTVRSHSGRHNTGRDPVAWAQEAERLGAGELFLTAIDREGTWSGFDIDLVKKVTDA 194

Query: 199 VTIPIIASGGVHHVGDVEALCRVEDEGIEAVICGRSI 235
           V+IP+IA GG   + D+  +  V+  G  AV  G  +
Sbjct: 195 VSIPVIAHGGAGSLSDIRKV--VKQAGASAVALGSMV 229


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.138    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 869,309
Number of extensions: 38568
Number of successful extensions: 108
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 105
Number of HSP's successfully gapped: 3
Length of query: 265
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 181
Effective length of database: 1,222,130
Effective search space: 221205530
Effective search space used: 221205530
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)