BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0024.0022.p
         (119 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313351|ref|YP_003777443.1| glutamine amidotransferase [Her...   225   6e-61
gi|300313488|ref|YP_003777580.1| glutamine amidotransferase [Her...    72   8e-15

>gi|300313351|ref|YP_003777443.1| glutamine amidotransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 212

 Score =  225 bits (574), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 110/112 (98%), Positives = 112/112 (100%)

Query: 1   MNKIVVVDYGMGNLRSVAQALRHVAPEADVRISGEVADIRAADRVVLPGQGAMPDCMRSL 60
           MNKIVVVDYGMGNLRSVAQALRHVAPEADVRISGEVADIRAADRVVLPGQGAMPDCMRSL
Sbjct: 1   MNKIVVVDYGMGNLRSVAQALRHVAPEADVRISGEVADIRAADRVVLPGQGAMPDCMRSL 60

Query: 61  RESGVQDAVLEASRTKPLFGVCVGEQMLFDWSEEGDTPGLGLLPGKVVRFEL 112
           RESGVQDAV+EASRTKPLFGVCVGEQMLFDWSEEGDTPGLGLLPGKVVRF+L
Sbjct: 61  RESGVQDAVIEASRTKPLFGVCVGEQMLFDWSEEGDTPGLGLLPGKVVRFDL 112


>gi|300313488|ref|YP_003777580.1| glutamine amidotransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 202

 Score = 72.4 bits (176), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 42/110 (38%), Positives = 66/110 (60%), Gaps = 5/110 (4%)

Query: 4   IVVVDYGMGNLRSVAQALRHVAPEADVRISGEVADIRAADRVVLPGQGAMPDCMRSLRES 63
           I +V+YGMGNL S+    + +  +A  RI  +   +R A+++VLPG GA    M  + E+
Sbjct: 2   ITIVNYGMGNLGSLLNMFKRIGVKA--RIESDPEAVRDAEKLVLPGVGAFDAAMHRINET 59

Query: 64  -GVQDAVLEASRTK--PLFGVCVGEQMLFDWSEEGDTPGLGLLPGKVVRF 110
            G++ A+   +  +  P+ GVC+G Q+L   SEEG  PGLG + G+ +RF
Sbjct: 60  PGLRAALDHKALIERVPVIGVCLGMQLLTRSSEEGKLPGLGWIDGEAIRF 109


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.139    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 399,890
Number of extensions: 15484
Number of successful extensions: 57
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 57
Number of HSP's successfully gapped: 2
Length of query: 119
Length of database: 1,619,870
Length adjustment: 74
Effective length of query: 45
Effective length of database: 1,269,480
Effective search space: 57126600
Effective search space used: 57126600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 124 (52.4 bits)