BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0024.0020.p (360 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313353|ref|YP_003777445.1| histidinol-phosphate aminotrans... 631 0.0 gi|300313983|ref|YP_003778075.1| histidinol-phosphate aminotrans... 137 1e-33 gi|300311875|ref|YP_003775967.1| aspartate/tyrosine/aromatic ami... 63 4e-11 gi|300313928|ref|YP_003778020.1| GntR family transcription regul... 59 6e-10 >gi|300313353|ref|YP_003777445.1| histidinol-phosphate aminotransferase 1 protein [Herbaspirillum seropedicae SmR1] Length = 372 Score = 631 bits (1627), Expect = 0.0, Method: Compositional matrix adjust. Identities = 320/359 (89%), Positives = 343/359 (95%) Query: 1 VDDLVANVIRPLVRGWQSYHVPSAEGRVKLDAMENPYLLPPALREELAQRLAALELNRYP 60 +D L+ANVIRP+VRGWQSYHVPSAEG VKLDAMENPYLLP LRE+LAQRLAALELNRYP Sbjct: 13 IDQLIANVIRPVVRGWQSYHVPSAEGMVKLDAMENPYLLPAELREQLAQRLAALELNRYP 72 Query: 61 VPSYTRLKAAICAQLGVPAGYDVLLGNGSDELITMLSVACAIPGRTILAPEPGFVMYGVS 120 VPSYT LKAAIC LGVPAGYDVLLGNGSDELIT+LSVACA PGRTILAPEPGFVMYGVS Sbjct: 73 VPSYTALKAAICKGLGVPAGYDVLLGNGSDELITLLSVACAQPGRTILAPEPGFVMYGVS 132 Query: 121 AKMAGLDYVGVPLRADLTLDLPAMLAAIEQHKPVITWLGYPNNPTGTLYPMADVLRIIEA 180 AKMAGL+YVGVPL ADL+LDLPAMLAA+E HKPVITWLGYPNNPTGTLY MADVLRI+EA Sbjct: 133 AKMAGLEYVGVPLCADLSLDLPAMLAAMEAHKPVITWLGYPNNPTGTLYEMADVLRIVEA 192 Query: 181 AAPYGLVVVDEAYQPFAASTLMPALPQHNNLVVMRTVSKLGLAGIRLGYLSAAPALLREL 240 AAPYGLVVVDEAYQPFAASTLMPALPQHNNLV+MRTVSKLGLAGIRLGYLSAAPALLREL Sbjct: 193 AAPYGLVVVDEAYQPFAASTLMPALPQHNNLVLMRTVSKLGLAGIRLGYLSAAPALLREL 252 Query: 241 DKVRPPYNVNMLTEAAALFVLEHLQVLEAQAAQLREARSVLAAELAALEGVEVFPSAANF 300 DKVRPPYNVN+LTEAAALF+LEHL VL+AQAA+LR+ARS LAAELAAL+GV+VFPSAANF Sbjct: 253 DKVRPPYNVNVLTEAAALFMLEHLDVLQAQAARLRQARSALAAELAALDGVQVFPSAANF 312 Query: 301 ILIRVPEADKVCAALLARRVLVKNAGRMHVLLQNCLRITVSTDEENAIFLTALKDALRE 359 +LIRVP+ADKVCA+LLA RVLVKNAGRMHVLLQNCLRITVS+D+ENA+FL ALK ALRE Sbjct: 313 LLIRVPDADKVCASLLAHRVLVKNAGRMHVLLQNCLRITVSSDKENAMFLAALKTALRE 371 >gi|300313983|ref|YP_003778075.1| histidinol-phosphate aminotransferase 1 protein [Herbaspirillum seropedicae SmR1] Length = 360 Score = 137 bits (345), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 115/344 (33%), Positives = 175/344 (50%), Gaps = 21/344 (6%) Query: 28 VKLDAMENPYLLPPALREELAQRLAALELNRYPVPSYTRLKAAIC---AQLGVPAGYDVL 84 VKL+ E+PY P + +A+ ++ L YP P LK AI A GV +V Sbjct: 27 VKLNTNESPYGPSPLALQAIAREVSD-SLRLYPNPDAEPLKQAIARRHAADGVSV-REVF 84 Query: 85 LGNGSDELITMLSVACAIPGRTILAPEPGFVMYGVSAKMAGLDYVGVPLRADLTLDLPAM 144 +GNGSDE++ A G+ IL P+ + Y A + ++Y VPL D TL Sbjct: 85 VGNGSDEVLAHAFHALLQHGKPILFPDITYSFYPTYAGLYQVEYRAVPLAEDFTLRSEDY 144 Query: 145 LAAIEQHKPVITWLGY--PNNPTGTLYPMADVLRIIEAAAPYGLVVVDEAYQPFAASTLM 202 L H I + + PN PTG L +ADV RI++ P +VVVDEAY F + + Sbjct: 145 LG----HGQAIGGIIFPNPNAPTGCLLGLADVERILQ-GNPERVVVVDEAYIDFGGQSAI 199 Query: 203 PALPQHNNLVVMRTVSK-LGLAGIRLGYLSAAPALLRELDKVRPPYNVNMLTE---AAAL 258 P + ++ NL+V++T+SK LAG+R+G+ L+ L++V+ +N L A A Sbjct: 200 PLVQRYPNLLVVQTLSKSRALAGMRVGFAVGHADLIDALERVKNSFNSYPLDRPAIAGAT 259 Query: 259 FVLEHLQVLEAQAAQLREARSVLAAELAALEGVEVFPSAANFILIRVPEADKVCAALLAR 318 +E + +R+ LAA+LA L G +V PSAANF+ +R P+ D A R Sbjct: 260 AAIEDEDYFRKTCNMVIASRTALAAQLAGL-GFQVLPSAANFLFVRHPQHDAAQLAAALR 318 Query: 319 R--VLVKNAGRMHVLLQNCLRITVSTDEENAIFLTALKDALREQ 360 ++V++ + LRIT+ TDE+ + + AL+ L +Q Sbjct: 319 ADGIIVRHFKSERI--SQFLRITIGTDEDCGVLVEALRRHLGQQ 360 >gi|300311875|ref|YP_003775967.1| aspartate/tyrosine/aromatic aminotransferase [Herbaspirillum seropedicae SmR1] Length = 431 Score = 62.8 bits (151), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 63/249 (25%), Positives = 112/249 (44%), Gaps = 11/249 (4%) Query: 88 GSDELITMLSVACAIPGRTILAPEPGFVMYGVSAKMAGLDYVGVPLRADLTLDLPAMLAA 147 GS E + L +A G T+L P P + ++ A +AG + V + + A Sbjct: 137 GSKEGLAHLMLATLDKGDTVLVPNPSYPIHIYGAVIAGANIRSVRMSPGVDFFDELERAV 196 Query: 148 IEQH-KPVITWLGYPNNPTGTLYPMADVLRIIEAAAPYGLVVV------DEAYQPFAAST 200 E + KP + LG+P+NPT + R+++ A + ++VV D + + A + Sbjct: 197 RESYPKPKMMILGFPSNPTAQCVELEFFERVVKLAREHQILVVHDLAYADITFDGWKAPS 256 Query: 201 LMPALPQHNNLVVMRTVSK-LGLAGIRLGYLSAAPALLRELDKVRPPYNVNMLT--EAAA 257 +M V T+SK +AG R+G++ L+ L +++ ++ T + AA Sbjct: 257 IMQVPGAREVAVEFFTLSKSYNMAGWRIGFMVGNARLVAALARIKSYHDYGSFTPVQVAA 316 Query: 258 LFVLEHLQ-VLEAQAAQLREARSVLAAELAALEGVEVFPSAANFILIRVPEADKVCAALL 316 + LE Q +E A R+VL L + P A+ +I R+PE + +L Sbjct: 317 IAALEGDQSCVEEIRANYERRRNVLVKGLHEAGWMVDVPKASMYIWARIPEPYRQFGSLE 376 Query: 317 ARRVLVKNA 325 R+L++ A Sbjct: 377 FARILLEQA 385 >gi|300313928|ref|YP_003778020.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 472 Score = 58.9 bits (141), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 59/231 (25%), Positives = 108/231 (46%), Gaps = 23/231 (9%) Query: 82 DVLLGNGSDELITMLSVACAIPGRTILAPEPGFVMYGVSAKMAGLDYVGVPLRADLTLDL 141 VL +G+ + + ++ PG T+L +PG+ ++AGL+ +GVP R +D Sbjct: 184 QVLTTHGATQALDLVIRTMTQPGDTVLIDDPGYCNLIAMLRLAGLNVIGVP-RTPGGVDT 242 Query: 142 PAMLAAIEQHKPVITW-LGYPNNPTGTLYPMADVLRIIEAAAPYGLVVV-DEAYQPFAAS 199 + H P + + NPTGT Y A +R+++AA +G VV D+ ++ + Sbjct: 243 DVLETLARTHHPKMFFTTSVLQNPTGTSYTPACAMRVLQAAERHGFWVVEDDIFRELGQA 302 Query: 200 T--LMPALPQHNNLVVMRTVSKLGLAGIRLGYLSAAPALLREL-----------DKVRPP 246 T ++ AL ++ + + SK +R+GY++ L R++ ++ Sbjct: 303 TDPMLAALDGLQRVIYVGSYSKTIAPSLRVGYIACQRELARQIVHTKMVLTLTNSEINER 362 Query: 247 YNVNMLTEAAALFVLEHLQVLEAQAAQLREARSVLAAELAALEGVEVFPSA 297 N+LTE H+Q L A L A++ L A+L+ + G+ F +A Sbjct: 363 LVHNVLTEGHH---RRHVQTLN---ATLLSAQATLNAKLSEV-GLTPFTAA 406 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.136 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,045,814 Number of extensions: 42264 Number of successful extensions: 168 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 164 Number of HSP's successfully gapped: 5 Length of query: 360 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 274 Effective length of database: 1,212,660 Effective search space: 332268840 Effective search space used: 332268840 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)