BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0024.0013.p (306 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313359|ref|YP_003777451.1| multidrug ABC transporter ATPas... 590 e-170 gi|300310523|ref|YP_003774615.1| branched-chain amino acid ABC t... 119 2e-28 gi|300309521|ref|YP_003773613.1| branched-chain amino acid ABC t... 119 2e-28 gi|300311269|ref|YP_003775361.1| multidrug ABC transporter ATPas... 116 3e-27 gi|300310829|ref|YP_003774921.1| amino acid ABC transporter ATPa... 115 6e-27 >gi|300313359|ref|YP_003777451.1| multidrug ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 303 Score = 590 bits (1520), Expect = e-170, Method: Compositional matrix adjust. Identities = 288/306 (94%), Positives = 298/306 (97%), Gaps = 3/306 (0%) Query: 1 MAALQITDIKKRYQSLQALGGVSLAIEEGEFFGLLGPNGAGKTTLISIIAGLNRADSGSV 60 MAALQI DIKKRYQSLQALGGVSLAIEEGEFFGLLGPNGAGKTTLISIIAGLNRADSG+V Sbjct: 1 MAALQINDIKKRYQSLQALGGVSLAIEEGEFFGLLGPNGAGKTTLISIIAGLNRADSGTV 60 Query: 61 TIHGHDVVSDYRGARMNLGVVPQELVFDPFFTVRETLRMQSGYFGLTNNDKWIDEVMDNL 120 TIHGHDVVSDYR ARM LGVVPQELVFDPFFTVRETLRMQSGYFGL++NDKWIDEVM+NL Sbjct: 61 TIHGHDVVSDYRAARMKLGVVPQELVFDPFFTVRETLRMQSGYFGLSSNDKWIDEVMENL 120 Query: 121 DLTNKADTNMRALSGGMKRRVLVAQALVHKPPVIVLDEPTAGVDVELRQTLWQFIGRLNR 180 DLTNKADTNMRALSGGMKRRVLVAQALVHKPPVIVLDEPTAGVDVELRQTLWQFIGRLNR Sbjct: 121 DLTNKADTNMRALSGGMKRRVLVAQALVHKPPVIVLDEPTAGVDVELRQTLWQFIGRLNR 180 Query: 181 EGHTIVLTTHYLEEAQALCNRIAMLKFGKVVALDSTDALIRRISGSQMVLRLKRGSLPDG 240 EGHTIVLTTHYLEEAQALCNRIAMLKFGKVVALDST+ LIRRISGSQMVLRLKRGSLP+G Sbjct: 181 EGHTIVLTTHYLEEAQALCNRIAMLKFGKVVALDSTEGLIRRISGSQMVLRLKRGSLPEG 240 Query: 241 LKALVTHPEELLAGNAANKYTLRVNDYKEVEPILATLRASGAEIDDLQLQQADLEDVFIQ 300 LK+LVTHPEELL+G NKYTLRVNDY+EVEPILA LRA+GAEIDDLQLQQADLEDVFIQ Sbjct: 241 LKSLVTHPEELLSG---NKYTLRVNDYQEVEPILAALRAAGAEIDDLQLQQADLEDVFIQ 297 Query: 301 IMGDEK 306 IMGDEK Sbjct: 298 IMGDEK 303 >gi|300310523|ref|YP_003774615.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 255 Score = 119 bits (299), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 75/228 (32%), Positives = 119/228 (52%), Gaps = 19/228 (8%) Query: 4 LQITDIKKRYQSLQALGGVSLAIEEGEFFGLLGPNGAGKTTLISIIAGLNRADSGSVTIH 63 L+I D+ KR+ LQAL GV + IE G+ +GL+GPNGAGKTT ++I GL + D+G+ + Sbjct: 6 LKIRDVSKRFGGLQALNGVGITIERGQIYGLIGPNGAGKTTFFNVITGLYQPDTGTFELD 65 Query: 64 G--HDVVSDYRGARMNLGVVPQELVFDPFFTVRET------LRMQSGYFGLTNNDKWIDE 115 G + + + A+ + Q + TV E +R + FG K E Sbjct: 66 GKPYSPSAPHEVAKAGIARTFQNIRLFGEMTVLENVMVGCHVRTKQNVFGAVFRHKAARE 125 Query: 116 -----------VMDNLDLTNKADTNMRALSGGMKRRVLVAQALVHKPPVIVLDEPTAGVD 164 ++D + + A R LS G +RR+ +A+AL P ++ LDEP AG++ Sbjct: 126 EEAAIREKSQKLLDFVGIGQFAKRTARHLSYGDQRRLEIARALATDPQLLALDEPAAGMN 185 Query: 165 VELRQTLWQFIGRLNREGHTIVLTTHYLEEAQALCNRIAMLKFGKVVA 212 + L + + ++ EG TI+L H ++ LCNRI +L +GK +A Sbjct: 186 ATEKLGLRELLVKIQAEGKTILLIEHDVKLMMGLCNRITVLDYGKPIA 233 >gi|300309521|ref|YP_003773613.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 255 Score = 119 bits (299), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 75/228 (32%), Positives = 119/228 (52%), Gaps = 19/228 (8%) Query: 4 LQITDIKKRYQSLQALGGVSLAIEEGEFFGLLGPNGAGKTTLISIIAGLNRADSGSVTIH 63 L+I D+ KR+ LQAL GV + IE G+ +GL+GPNGAGKTT ++I GL + D+G+ + Sbjct: 6 LKIRDVSKRFGGLQALNGVGITIERGQIYGLIGPNGAGKTTFFNVITGLYQPDTGTFELD 65 Query: 64 G--HDVVSDYRGARMNLGVVPQELVFDPFFTVRET------LRMQSGYFGLTNNDKWIDE 115 G + + + A+ + Q + TV E +R + FG K E Sbjct: 66 GKPYSPSAPHEVAKAGIARTFQNIRLFGEMTVLENVMVGCHVRTRQNVFGAVFRHKAARE 125 Query: 116 -----------VMDNLDLTNKADTNMRALSGGMKRRVLVAQALVHKPPVIVLDEPTAGVD 164 ++D + + A R LS G +RR+ +A+AL P ++ LDEP AG++ Sbjct: 126 EEAAIREKSQKLLDFVGIGQFAKRTARHLSYGDQRRLEIARALATDPQLLALDEPAAGMN 185 Query: 165 VELRQTLWQFIGRLNREGHTIVLTTHYLEEAQALCNRIAMLKFGKVVA 212 + L + + ++ EG TI+L H ++ LCNRI +L +GK +A Sbjct: 186 ATEKLGLRELLVKIQAEGKTILLIEHDVKLMMGLCNRITVLDYGKPIA 233 >gi|300311269|ref|YP_003775361.1| multidrug ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 913 Score = 116 bits (290), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 78/236 (33%), Positives = 129/236 (54%), Gaps = 9/236 (3%) Query: 1 MAALQITDIKKRYQSLQALGGVSLAIEEGEFFGLLGPNGAGKTTLISIIAGLNRADSGSV 60 + A ++ D+ Y AL V L I G GL+GP+G GK+TL+S+IAG R +G + Sbjct: 5 ICAARVHDVSHSYGKNPALSHVELDIPGGCMAGLIGPDGVGKSTLLSLIAGARRIRAGRI 64 Query: 61 TIHGHDV-VSDYRGA-RMNLGVVPQELVFD--PFFTVRETLRMQSGYFGLTNNDKW--ID 114 + G D+ + +R A + +PQ L + P +V E L+ + FG ++ ID Sbjct: 65 DVLGGDIGQAAHRDAVGPCIAYMPQGLGKNLYPTLSVEENLQFIARLFGQDAQERRQRID 124 Query: 115 EVMDNLDLTNKADTNMRALSGGMKRRVLVAQALVHKPPVIVLDEPTAGVDVELRQTLWQF 174 ++ + L LSGGMK+++ + AL+H P +++LDEPT GVD R W+ Sbjct: 125 DLTHSTGLQPFLARPAGQLSGGMKQKLSLCCALIHDPDLLILDEPTTGVDPLARAQFWEL 184 Query: 175 IGRLNRE--GHTIVLTTHYLEEAQALCNRIAMLKFGKVVALDSTDALIRRISGSQM 228 I RL + G ++++ T Y++EAQA + +A++ G+V+A + AL+ R S + Sbjct: 185 IARLRQRHPGMSVIVATAYMDEAQAF-DWLAVMDQGQVLATGTPAALLARTGASSL 239 Score = 112 bits (279), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 71/224 (31%), Positives = 115/224 (51%), Gaps = 5/224 (2%) Query: 3 ALQITDIKKRYQ-SLQALGGVSLAIEEGEFFGLLGPNGAGKTTLISIIAGLNRADSGSVT 61 A++ ++ R+ A+ VS I GE FG LG NG GKTT + ++ GL A SG Sbjct: 271 AIEAENLSMRFADGFTAVDHVSFRIRRGEIFGFLGSNGCGKTTTMKMLTGLLPASSGRAR 330 Query: 62 IHGHDVVSDYRGARMNLGVVPQELVFDPFFTVRETLRMQSGYFGLTNND--KWIDEVMDN 119 + G ++ R +G + Q +VR+ L + + F L + E+ Sbjct: 331 LFGQEIDPRDVCLRKRVGYMSQSFSLYKDLSVRQNLALHARLFHLPAAQIGPRVAEMARR 390 Query: 120 LDLTNKADTNMRALSGGMKRRVLVAQALVHKPPVIVLDEPTAGVDVELRQTLWQFIGRLN 179 L D+ L G+++R+ +A A +H P +++LDEPT+GVD R WQ + L+ Sbjct: 391 FALMPVMDSLAADLPMGIRQRLSLAVATIHGPEILILDEPTSGVDPVARDHFWQLLVTLS 450 Query: 180 REGH-TIVLTTHYLEEAQALCNRIAMLKFGKVVALDSTDALIRR 222 R TI L+TH++ EA C+R++M+ GKV+ D+ AL+ + Sbjct: 451 RRDKVTIFLSTHFMNEALR-CDRMSMMHAGKVLDSDTPAALMHK 493 >gi|300310829|ref|YP_003774921.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 115 bits (287), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 68/216 (31%), Positives = 118/216 (54%), Gaps = 6/216 (2%) Query: 1 MAALQITDIKKRYQSLQALGGVSLAIEEGEFFGLLGPNGAGKTTLISIIAGLNRADSGSV 60 M ++I +I KR+ S Q L G+SL++E G+ ++G +G+GK+T++ I GL D GS+ Sbjct: 1 MPIVEINNITKRFGSNQVLNGISLSVERGQVVAIIGRSGSGKSTMLRCINGLETIDGGSI 60 Query: 61 TIHGHDVVSDYRG---ARMNLGVVPQELVFDPFFTVRETLRMQSGYFGLTNNDKWID--- 114 T+ GH + + R ++G+V Q P TV E + + T + + Sbjct: 61 TVAGHKLTHKHEHLIELRKDVGMVFQHYNLFPHLTVEENIMLSPRIVKKTATETARETAI 120 Query: 115 EVMDNLDLTNKADTNMRALSGGMKRRVLVAQALVHKPPVIVLDEPTAGVDVELRQTLWQF 174 +V+ + L +K D LSGG ++RV +A++L +P V++ DE T+ +D EL + + Sbjct: 121 KVLKQVGLDHKRDAYPEQLSGGQQQRVAIARSLAMEPQVMLFDEVTSALDPELTAEVLKV 180 Query: 175 IGRLNREGHTIVLTTHYLEEAQALCNRIAMLKFGKV 210 + L R G T++L TH +E A+ + + + GKV Sbjct: 181 MEELARGGMTMLLVTHEMEFARRVADLTVFMHQGKV 216 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.137 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 912,118 Number of extensions: 38221 Number of successful extensions: 503 Number of sequences better than 1.0e-08: 127 Number of HSP's gapped: 334 Number of HSP's successfully gapped: 143 Length of query: 306 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 221 Effective length of database: 1,217,395 Effective search space: 269044295 Effective search space used: 269044295 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)