BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0024.0007.p
         (257 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313364|ref|YP_003777456.1| organic solvents resistance ABC...   432   e-122
gi|300312192|ref|YP_003776284.1| organic solvents resistance ABC...    87   1e-18

>gi|300313364|ref|YP_003777456.1| organic solvents resistance ABC
           transporter permease [Herbaspirillum seropedicae SmR1]
          Length = 259

 Score =  432 bits (1112), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 245/259 (94%), Positives = 252/259 (97%), Gaps = 2/259 (0%)

Query: 1   MIAGFVSGLGRSVREFVVGVGFAGRMFINMLGASLGLLRRPRLITDQIHFIGNYSLVIIT 60
           MIAG VSGLGRS+REFVVGVGFAGRMF +MLG+SLGLLRRPRLITDQIHFIGNYSLVII 
Sbjct: 1   MIAGLVSGLGRSLREFVVGVGFAGRMFASMLGSSLGLLRRPRLITDQIHFIGNYSLVIIA 60

Query: 61  VSGLFVGFVLGLQGYYTLNKYGSEQALGLLVALSLTRELGPVVTALLFAGRAGTSLTAEI 120
           VSGLFVGFVLGLQGYYTLNKYGSEQALGLLVALSLTRELGPVVTALLFAGRAGTSLTAEI
Sbjct: 61  VSGLFVGFVLGLQGYYTLNKYGSEQALGLLVALSLTRELGPVVTALLFAGRAGTSLTAEI 120

Query: 121 GLMKAGEQLSAMEMMAVNPLQRVVAPRFWAGVIAMPVLAAIFSAVGVLGGYVVGVLLIGV 180
           GLMKAGEQLSAMEMMAVNPLQRVVAPRFWAGVIAMPVLAAIFSAVGV+GGYVVGVLLIGV
Sbjct: 121 GLMKAGEQLSAMEMMAVNPLQRVVAPRFWAGVIAMPVLAAIFSAVGVIGGYVVGVLLIGV 180

Query: 181 DEGAFWSQMQGGVDVWNDIANGVLKSIVFGIAVTFVALFQGYEAQPTPEGV--ALTRTVV 238
           DEGAFWSQMQGGVDVWNDIANGVLKS+VFG+AVTFVALFQGYEA+PTPEGV  A TRTVV
Sbjct: 181 DEGAFWSQMQGGVDVWNDIANGVLKSVVFGVAVTFVALFQGYEAKPTPEGVARATTRTVV 240

Query: 239 IASLTVLGLDFLLTALMFS 257
           IASL VLGLDFLLTALMFS
Sbjct: 241 IASLLVLGLDFLLTALMFS 259


>gi|300312192|ref|YP_003776284.1| organic solvents resistance ABC
           transporter permease [Herbaspirillum seropedicae SmR1]
          Length = 380

 Score = 87.0 bits (214), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 76/248 (30%), Positives = 127/248 (51%), Gaps = 4/248 (1%)

Query: 12  SVREFVVGV-GFAGRMFINMLGASLGLLR-RPRLITDQIHFIGNYSLVIITVSGLFVGFV 69
           S+R   +G+ GF G     +L +     R R   +  QI   G  ++ I+++    VG V
Sbjct: 129 SLRACALGLLGFMGLCLQTLLSSFWRPSRWRVTAVVAQIEQTGLDAVPIVSLLTFMVGAV 188

Query: 70  LGLQGYYTLNKYGSEQALGLLVALSLTRELGPVVTALLFAGRAGTSLTAEIGLMKAGEQL 129
           +   G   L  +G+      LVA S  RE   ++TA+L AGR  +S TA+IG MKA E++
Sbjct: 189 VAFLGATVLANFGASIYTVDLVAFSFLREFAVLLTAILMAGRTASSFTAQIGSMKANEEI 248

Query: 130 SAMEMMAVNPLQRVVAPRFWAGVIAMPVLAAIFSAVGVLGGYVVGVLLIGVDEGAFWSQM 189
            A+  + ++P++ +V PR  A ++AMP L  I    G+ GG +V  L + +    F S +
Sbjct: 249 DAIRALGLDPIKLLVLPRLIALLVAMPALTFIAMLSGLFGGAMVCALSLDISPTMFLSLL 308

Query: 190 QGGVDVWNDIANGVLKSIVFGIAVTFVALFQGYEAQPTPEGV-ALTRTVVIASLTVLGLD 248
           Q  V + + I  G++K+ +F   V  +   +G++   + + V   T + V+ S+ V+ L 
Sbjct: 309 QQDVGIRHFIL-GMVKAPLFAFVVAVIGCNEGFKVSGSAQSVGQHTTSSVVQSIFVVILL 367

Query: 249 FLLTALMF 256
             L AL F
Sbjct: 368 DALAALFF 375


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.143    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 707,543
Number of extensions: 26612
Number of successful extensions: 150
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 149
Number of HSP's successfully gapped: 2
Length of query: 257
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 174
Effective length of database: 1,226,865
Effective search space: 213474510
Effective search space used: 213474510
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 129 (54.3 bits)