BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0024.0006.p (119 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313365|ref|YP_003777457.1| organic solvents resistance ABC... 232 6e-63 gi|300310986|ref|YP_003775078.1| sulfate/molybdate ABC transport... 71 3e-14 gi|300313259|ref|YP_003777351.1| ABC transporter ATPase [Herbasp... 68 2e-13 gi|300313814|ref|YP_003777906.1| spermidine/putrescine ABC trans... 66 7e-13 gi|300309936|ref|YP_003774028.1| spermidine/putrescine ABC trans... 66 8e-13 >gi|300313365|ref|YP_003777457.1| organic solvents resistance ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 243 Score = 232 bits (591), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 112/119 (94%), Positives = 117/119 (98%) Query: 1 VALARAIALDPALIMYDEPFAGLDPISMGVTANLIRRLNDALGSTSILVSHDVNESFAIA 60 VALARAIALDPALIMYDEPFAGLDPISMGVTANLIRRLNDALGSTSILVSHDVNESFAIA Sbjct: 125 VALARAIALDPALIMYDEPFAGLDPISMGVTANLIRRLNDALGSTSILVSHDVNESFAIA 184 Query: 61 DYVYFLSAGKIVAQGTPQEMRESTDPYVKQFVHAQADGPVPFHYPGKSLAEDLGLGGAA 119 D+VYFLSAGKIVAQGTP+E+R STDPYV+QFVHA+ADGPVPFHYPGKSLAEDLGLGG A Sbjct: 185 DHVYFLSAGKIVAQGTPEELRSSTDPYVRQFVHAEADGPVPFHYPGKSLAEDLGLGGGA 243 >gi|300310986|ref|YP_003775078.1| sulfate/molybdate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 359 Score = 70.9 bits (172), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 35/93 (37%), Positives = 55/93 (59%), Gaps = 1/93 (1%) Query: 1 VALARAIALDPALIMYDEPFAGLDPISMGVTANLIRRLNDALGSTSILVSHDVNESFAIA 60 +ALARA+A++P +++ DEPF LD +RRL+D L TSI V+HD E+ +A Sbjct: 145 IALARALAVEPRVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTSIFVTHDQEEALEVA 204 Query: 61 DYVYFLSAGKIVAQGTPQEM-RESTDPYVKQFV 92 D V ++ G++ GTP+ + P+V F+ Sbjct: 205 DQVVLMNKGQVEQIGTPEAVYNHPASPFVYGFL 237 >gi|300313259|ref|YP_003777351.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 247 Score = 68.2 bits (165), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 30/80 (37%), Positives = 50/80 (62%), Gaps = 1/80 (1%) Query: 1 VALARAIALDPALIMYDEPFAGLDPISMGVTANLIRRLNDALGSTSILVSHDVNESFAIA 60 V +ARA+A DP ++ DEPFAG+DPI++ ++R L + G ++ H+V E+ I Sbjct: 152 VEIARALATDPRFVLLDEPFAGIDPIAVIEIQRIVRFLKER-GIGVLITDHNVRETLGIC 210 Query: 61 DYVYFLSAGKIVAQGTPQEM 80 D Y ++ G ++A G P+E+ Sbjct: 211 DRAYIINQGTVLASGNPEEI 230 >gi|300313814|ref|YP_003777906.1| spermidine/putrescine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 362 Score = 66.2 bits (160), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 32/80 (40%), Positives = 49/80 (61%) Query: 1 VALARAIALDPALIMYDEPFAGLDPISMGVTANLIRRLNDALGSTSILVSHDVNESFAIA 60 VA+ARA+ +P +I+ DEP + LD +R L LG ++++V+HD E+ AI+ Sbjct: 152 VAIARALVYNPQVILLDEPLSNLDAKLREEARAFLRELIVRLGLSALMVTHDQGEAMAIS 211 Query: 61 DYVYFLSAGKIVAQGTPQEM 80 D + L+ G+I QGTPQ M Sbjct: 212 DRILLLNNGRIEQQGTPQSM 231 >gi|300309936|ref|YP_003774028.1| spermidine/putrescine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 361 Score = 65.9 bits (159), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 38/103 (36%), Positives = 60/103 (58%), Gaps = 3/103 (2%) Query: 1 VALARAIALDPALIMYDEPFAGLDPISMGVTANLIRRLNDALGSTSILVSHDVNESFAIA 60 VALARA+A++P +++ DEP LD + + +L +LG T+I V+HD E+ A+ Sbjct: 150 VALARALAMEPRVLLLDEPLTALDAKLREAVRSDLNKLLRSLGITAIYVTHDQGEAMALG 209 Query: 61 DYVYFLSAGKIVAQGTPQEM-RESTDPYVKQFVHA--QADGPV 100 D + + GKI GTPQE+ + +V +F+ A + DG V Sbjct: 210 DRIVVMERGKISQIGTPQEIYYHPANDFVAEFIGAMNRVDGIV 252 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.136 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 398,241 Number of extensions: 14859 Number of successful extensions: 228 Number of sequences better than 1.0e-08: 27 Number of HSP's gapped: 265 Number of HSP's successfully gapped: 27 Length of query: 119 Length of database: 1,619,870 Length adjustment: 74 Effective length of query: 45 Effective length of database: 1,269,480 Effective search space: 57126600 Effective search space used: 57126600 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 124 (52.4 bits)