BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0024.0005.p (163 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313365|ref|YP_003777457.1| organic solvents resistance ABC... 238 3e-64 gi|300312193|ref|YP_003776285.1| organic solvents resistance ABC... 103 5e-24 gi|300310986|ref|YP_003775078.1| sulfate/molybdate ABC transport... 92 2e-20 gi|300313168|ref|YP_003777260.1| amino acid ABC transporter ATPa... 91 3e-20 gi|300311638|ref|YP_003775730.1| metal ion ABC transporter ATPas... 82 2e-17 >gi|300313365|ref|YP_003777457.1| organic solvents resistance ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 243 Score = 238 bits (606), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 117/123 (95%), Positives = 122/123 (99%) Query: 28 MDFPRGKVVAVMGGSGSGKTTILRLIGGQLQPQEGRVEVDGENVPSLATKQLYVLRRKMG 87 MDFPRGKVVAVMGGSGSGKTTILRLIGGQL+PQ+G+VEVDGENVP LATKQL++LRRKMG Sbjct: 1 MDFPRGKVVAVMGGSGSGKTTILRLIGGQLRPQQGKVEVDGENVPDLATKQLFLLRRKMG 60 Query: 88 MLFQNGALFTDMTVFDNVAFPLREHTDLDETLIRDLVLMKLNAVGLRNAASLKPAEISGG 147 MLFQNGALFTDMTVFDNVAFPLREHTDLDETLIRDLVLMKLNAVGLRNAASLKPAEISGG Sbjct: 61 MLFQNGALFTDMTVFDNVAFPLREHTDLDETLIRDLVLMKLNAVGLRNAASLKPAEISGG 120 Query: 148 MAR 150 MAR Sbjct: 121 MAR 123 >gi|300312193|ref|YP_003776285.1| organic solvents resistance ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 278 Score = 103 bits (258), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 58/145 (40%), Positives = 91/145 (62%), Gaps = 1/145 (0%) Query: 7 IVEIRDLHFRYGDRPILTGLQMDFPRGKVVAVMGGSGSGKTTILRLIGGQLQPQEGRVEV 66 I+E+R L ++G + + L + RG+++ V+GGSG+GK+ +LR I G L+P G V V Sbjct: 19 IIEVRGLRNQFGTQVVHEQLDLQVRRGEILGVVGGSGTGKSVLLRSIVGLLRPAAGEVRV 78 Query: 67 DGENVPSLATKQLYVLRRKMGMLFQNGALFTDMTVFDNVAFPLREHTDLDETLIRDLVLM 126 G+++ +L+++ R+ G+LFQ GALF+ +TV +N+A PL E+ L+ R + M Sbjct: 79 FGQDLTALSSEARSGYERRFGVLFQQGALFSSLTVLENIALPLTEYGGLNADEARGVAAM 138 Query: 127 KLNAVGLRNAASLK-PAEISGGMAR 150 KL GL AA K PA +SGGM + Sbjct: 139 KLALAGLPIAAGDKYPAALSGGMIK 163 >gi|300310986|ref|YP_003775078.1| sulfate/molybdate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 359 Score = 92.0 bits (227), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 54/144 (37%), Positives = 82/144 (56%), Gaps = 8/144 (5%) Query: 8 VEIRDLHFRYGDRPILTGLQMDFPRGKVVAVMGGSGSGKTTILRLIGGQLQPQEGRVEVD 67 +E+ + R+G L + ++FP G++ A++G SG GKTT+LR+I G P G+V +D Sbjct: 3 IEVHHIQKRFGSFTALNDVSLNFPAGELTALLGPSGCGKTTLLRIIAGLESPDSGQVLLD 62 Query: 68 GENVPSLATKQLYVLRRKMGMLFQNGALFTDMTVFDNVAFPLR---EHTDLDETLIRDLV 124 GE+ + +V R++G +FQ+ ALF MTVF+N+AF LR E +IR+ V Sbjct: 63 GEDASA-----RHVRERQVGFVFQHYALFKHMTVFENIAFGLRVKPRSQRPSEAVIREKV 117 Query: 125 LMKLNAVGLRNAASLKPAEISGGM 148 L V L A P ++SGG Sbjct: 118 KRLLELVQLDWLADRYPPQLSGGQ 141 >gi|300313168|ref|YP_003777260.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 91.3 bits (225), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 48/147 (32%), Positives = 83/147 (56%) Query: 4 LTNIVEIRDLHFRYGDRPILTGLQMDFPRGKVVAVMGGSGSGKTTILRLIGGQLQPQEGR 63 ++ IV+I+DLH +G +L G+ +D +G++VA++G SGSGK+T+LR + G + G Sbjct: 1 MSAIVKIKDLHKSFGSNKVLNGVSLDVQKGQMVAIIGKSGSGKSTLLRCLNGLEKVDAGD 60 Query: 64 VEVDGENVPSLATKQLYVLRRKMGMLFQNGALFTDMTVFDNVAFPLREHTDLDETLIRDL 123 ++V G ++ L LR+++G++FQ+ LF +TV N+ L + + + Sbjct: 61 IQVCGHDIHHPDKLNLRELRKQVGIVFQSYNLFPHLTVERNITLALTTIKKMSTEQAKTI 120 Query: 124 VLMKLNAVGLRNAASLKPAEISGGMAR 150 L VGL N P ++SGG A+ Sbjct: 121 AHKVLQLVGLENKKDAYPEQLSGGQAQ 147 >gi|300311638|ref|YP_003775730.1| metal ion ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 389 Score = 82.0 bits (201), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 48/125 (38%), Positives = 71/125 (56%), Gaps = 1/125 (0%) Query: 23 LTGLQMDFPRGKVVAVMGGSGSGKTTILRLIGGQLQPQEGRVEVDGENVPSLATKQLYVL 82 L + ++ G + ++G SG+GK+++LR I +P GRVEVD ++ +L QL L Sbjct: 58 LQDIDLEIAPGSIFGIIGRSGAGKSSLLRTINRLERPTSGRVEVDDVDLATLDETQLVAL 117 Query: 83 RRKMGMLFQNGALFTDMTVFDNVAFPLREHTDLDETLIRDLVLMKLNAVGLRNAASLKPA 142 RR++GM+FQ+ L TVFDN+A PLR + I V L VGL++ A P Sbjct: 118 RRRIGMIFQHFNLLAAKTVFDNIALPLRV-AGVPRAQITQRVHELLALVGLQDKADSYPR 176 Query: 143 EISGG 147 +SGG Sbjct: 177 RLSGG 181 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.141 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 565,866 Number of extensions: 24162 Number of successful extensions: 324 Number of sequences better than 1.0e-08: 81 Number of HSP's gapped: 262 Number of HSP's successfully gapped: 81 Length of query: 163 Length of database: 1,619,870 Length adjustment: 78 Effective length of query: 85 Effective length of database: 1,250,540 Effective search space: 106295900 Effective search space used: 106295900 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 127 (53.5 bits)