BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0024.0004.p
         (371 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313366|ref|YP_003777458.1| GTP-binding protein [Herbaspiri...   692   0.0  
gi|300309707|ref|YP_003773799.1| GTPase [Herbaspirillum seropedi...    71   2e-13

>gi|300313366|ref|YP_003777458.1| GTP-binding protein
           [Herbaspirillum seropedicae SmR1]
          Length = 364

 Score =  692 bits (1786), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/370 (96%), Positives = 360/370 (97%), Gaps = 8/370 (2%)

Query: 1   MSLKCGIVGLPNVGKSTLFNALTKAGIAAENYPFCTIEPNVGIVEVPDPRLKALAEIVKP 60
           MSLKCGIVGLPNVGKSTLFNALTKAGIAAENYPFCTIEPNVGIVEVPDPRLKALAEIVKP
Sbjct: 1   MSLKCGIVGLPNVGKSTLFNALTKAGIAAENYPFCTIEPNVGIVEVPDPRLKALAEIVKP 60

Query: 61  ERILPATVEFVDIAGLVAGASKGEGLGNQFLSHIRETDAIVNVVRCFEDPNVIHVAGRVS 120
           ERILPATVEFVDIAGLVAGASKGEGLGNQFLSHIRETDAIVNVVRCFEDPNVIHVAGRVS
Sbjct: 61  ERILPATVEFVDIAGLVAGASKGEGLGNQFLSHIRETDAIVNVVRCFEDPNVIHVAGRVS 120

Query: 121 PLDDIAVIQTELALADMGTVEKAIHREQKKARSGDKDAAKLVALLERIMPALDEAKPVRA 180
           PLDDIAVIQTELALADMGTVEKAIHREQKKARSGDKDAAKLVALLERIMPALDEAKPVRA
Sbjct: 121 PLDDIAVIQTELALADMGTVEKAIHREQKKARSGDKDAAKLVALLERIMPALDEAKPVRA 180

Query: 181 LGLDAEEMLLIKPLCLITAKPAMYVANVSDSGFTDNPLLDQLTAYAQEQNAPIVAICAAI 240
           LGLDAEEMLLIKPLCLITAKPAMYVANVSDSGFTDNPLLDQLTAYA+EQNAPIVAICAAI
Sbjct: 181 LGLDAEEMLLIKPLCLITAKPAMYVANVSDSGFTDNPLLDQLTAYAKEQNAPIVAICAAI 240

Query: 241 EAEIADLDDADKADFLADMGMEEPGLDRLIRAAFKLLGLQTYFTAGVKEVRAWTVPVGAT 300
           EAEIADLDDADKADFLADMGMEEPGLDRLIRAAF+LLGLQTYFTAGVKEVRAWTVPV   
Sbjct: 241 EAEIADLDDADKADFLADMGMEEPGLDRLIRAAFRLLGLQTYFTAGVKEVRAWTVPV--- 297

Query: 301 FHXRPGATGPQAAGVIHTDFERGFIRAQTIAFEDFIAFKGETGAKEAGKMRAEGKEYVVK 360
                GATGPQAAGVIHTDFERGFIRAQTIAFEDFIAFKGE GAKEAGKMRAEGKEYVVK
Sbjct: 298 -----GATGPQAAGVIHTDFERGFIRAQTIAFEDFIAFKGEAGAKEAGKMRAEGKEYVVK 352

Query: 361 DGDVMNFLFN 370
           DGDVMNFLF 
Sbjct: 353 DGDVMNFLFT 362


>gi|300309707|ref|YP_003773799.1| GTPase [Herbaspirillum seropedicae
           SmR1]
          Length = 369

 Score = 70.9 bits (172), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 67/138 (48%), Gaps = 22/138 (15%)

Query: 5   CGIVGLPNVGKSTLFNALTKAGIAAENYPFCTIEPNVGIVEVPDPRLKALAEIVKPERIL 64
            G++G+PN GKST   A++ A     +YPF T+ PN+G+V V   +   +A         
Sbjct: 162 VGLLGMPNAGKSTFITAVSNARPKIADYPFTTLHPNLGVVRVSHEKSFVIA--------- 212

Query: 65  PATVEFVDIAGLVAGASKGEGLGNQFLSHIRETDAIVNVVRCFEDPNVIHVAGRVSPLDD 124
                  DI GL+ GA+ G GLG QFL H++ T  ++++V      ++      V P+ +
Sbjct: 213 -------DIPGLIEGAADGAGLGVQFLRHLQRTGLLLHIV------DLAPFNEEVDPVKE 259

Query: 125 IAVIQTELALADMGTVEK 142
              I  EL   D    +K
Sbjct: 260 AKAIVQELKKYDQSLFDK 277


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.137    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,095,207
Number of extensions: 45721
Number of successful extensions: 166
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 164
Number of HSP's successfully gapped: 2
Length of query: 371
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 284
Effective length of database: 1,207,925
Effective search space: 343050700
Effective search space used: 343050700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)