BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0023.0056.p
         (265 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309457|ref|YP_003773549.1| 50S ribosomal protein L4 [Herba...   424   e-120
gi|300309456|ref|YP_003773548.1| 50S ribosomal protein L3 [Herba...    80   2e-16

>gi|300309457|ref|YP_003773549.1| 50S ribosomal protein L4
           [Herbaspirillum seropedicae SmR1]
          Length = 206

 Score =  424 bits (1089), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 206/206 (100%), Positives = 206/206 (100%)

Query: 60  MELKLLNDQGQAASNVAAPDTIFGRDYNEALIHQVVVAYQANARSGNRKQKDREEVSHTT 119
           MELKLLNDQGQAASNVAAPDTIFGRDYNEALIHQVVVAYQANARSGNRKQKDREEVSHTT
Sbjct: 1   MELKLLNDQGQAASNVAAPDTIFGRDYNEALIHQVVVAYQANARSGNRKQKDREEVSHTT 60

Query: 120 KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPDENFTHKVNKKMYRAGVCSILSQLARE 179
           KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPDENFTHKVNKKMYRAGVCSILSQLARE
Sbjct: 61  KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPDENFTHKVNKKMYRAGVCSILSQLARE 120

Query: 180 GRLSVVEEFAVEAPKTKLLAQKLKGMGMESVLVITDSLDEKLLLASRNLPGVLVVEPRQA 239
           GRLSVVEEFAVEAPKTKLLAQKLKGMGMESVLVITDSLDEKLLLASRNLPGVLVVEPRQA
Sbjct: 121 GRLSVVEEFAVEAPKTKLLAQKLKGMGMESVLVITDSLDEKLLLASRNLPGVLVVEPRQA 180

Query: 240 DPVSLVYFKNVLITKPALAKIEELLA 265
           DPVSLVYFKNVLITKPALAKIEELLA
Sbjct: 181 DPVSLVYFKNVLITKPALAKIEELLA 206


>gi|300309456|ref|YP_003773548.1| 50S ribosomal protein L3
           [Herbaspirillum seropedicae SmR1]
          Length = 222

 Score = 79.7 bits (195), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 38/38 (100%), Positives = 38/38 (100%)

Query: 1   MTGHLGDVKTTVQNLEIARVDAERQLLLVKGAVPGAKN 38
           MTGHLGDVKTTVQNLEIARVDAERQLLLVKGAVPGAKN
Sbjct: 168 MTGHLGDVKTTVQNLEIARVDAERQLLLVKGAVPGAKN 205


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.132    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 795,017
Number of extensions: 31758
Number of successful extensions: 115
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 115
Number of HSP's successfully gapped: 2
Length of query: 265
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 181
Effective length of database: 1,222,130
Effective search space: 221205530
Effective search space used: 221205530
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 129 (54.3 bits)