BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0023.0037.p
         (424 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309476|ref|YP_003773568.1| preprotein translocase SecY tra...   850   0.0  

>gi|300309476|ref|YP_003773568.1| preprotein translocase SecY
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 443

 Score =  850 bits (2195), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 424/424 (100%), Positives = 424/424 (100%)

Query: 1   LWFLLGALIVYRIGAHIPVPGIDPTQLAQLFKQNQGGILGMFNMFSGGALSRFTIFALGI 60
           LWFLLGALIVYRIGAHIPVPGIDPTQLAQLFKQNQGGILGMFNMFSGGALSRFTIFALGI
Sbjct: 20  LWFLLGALIVYRIGAHIPVPGIDPTQLAQLFKQNQGGILGMFNMFSGGALSRFTIFALGI 79

Query: 61  MPYISASIIMQLLSVVSPQLEALKKEGEAGRRKITQYTRYGTLVLATFQALGIAVALESQ 120
           MPYISASIIMQLLSVVSPQLEALKKEGEAGRRKITQYTRYGTLVLATFQALGIAVALESQ
Sbjct: 80  MPYISASIIMQLLSVVSPQLEALKKEGEAGRRKITQYTRYGTLVLATFQALGIAVALESQ 139

Query: 121 AGLVLDPGLAFRLTTVVTLITGTMFLMWLGEQITERGLGNGISIIIFAGIAAGLPNALGG 180
           AGLVLDPGLAFRLTTVVTLITGTMFLMWLGEQITERGLGNGISIIIFAGIAAGLPNALGG
Sbjct: 140 AGLVLDPGLAFRLTTVVTLITGTMFLMWLGEQITERGLGNGISIIIFAGIAAGLPNALGG 199

Query: 181 LFELVRTGSMNALSAILICVIVALVTFLVVFIERGQRKILVNYAKRQVGNKIYGGQSSHL 240
           LFELVRTGSMNALSAILICVIVALVTFLVVFIERGQRKILVNYAKRQVGNKIYGGQSSHL
Sbjct: 200 LFELVRTGSMNALSAILICVIVALVTFLVVFIERGQRKILVNYAKRQVGNKIYGGQSSHL 259

Query: 241 PLKLNMAGVIPPIFASSIILFPATITSWFTSGDTSNPFIRFLKDLAASMAPGEPIHALLY 300
           PLKLNMAGVIPPIFASSIILFPATITSWFTSGDTSNPFIRFLKDLAASMAPGEPIHALLY
Sbjct: 260 PLKLNMAGVIPPIFASSIILFPATITSWFTSGDTSNPFIRFLKDLAASMAPGEPIHALLY 319

Query: 301 AVAIVFFCFFYTALVFNSKETADNLKKSGAFVPGIRPGDQTARYIDKILMRLTLAGAVYI 360
           AVAIVFFCFFYTALVFNSKETADNLKKSGAFVPGIRPGDQTARYIDKILMRLTLAGAVYI
Sbjct: 320 AVAIVFFCFFYTALVFNSKETADNLKKSGAFVPGIRPGDQTARYIDKILMRLTLAGAVYI 379

Query: 361 TLVCLLPEFLIARWKVPFYFGGTSLLIIVVVTMDFMAQVQNYVMSQQYESLLRKANFKGG 420
           TLVCLLPEFLIARWKVPFYFGGTSLLIIVVVTMDFMAQVQNYVMSQQYESLLRKANFKGG
Sbjct: 380 TLVCLLPEFLIARWKVPFYFGGTSLLIIVVVTMDFMAQVQNYVMSQQYESLLRKANFKGG 439

Query: 421 MTPR 424
           MTPR
Sbjct: 440 MTPR 443


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.142    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,241,963
Number of extensions: 48898
Number of successful extensions: 193
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 193
Number of HSP's successfully gapped: 1
Length of query: 424
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 336
Effective length of database: 1,203,190
Effective search space: 404271840
Effective search space used: 404271840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 132 (55.5 bits)