BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0023.0029.p
         (602 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309485|ref|YP_003773577.1| thiol:disulfide interchange tra...   981   0.0  

>gi|300309485|ref|YP_003773577.1| thiol:disulfide interchange
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 600

 Score =  981 bits (2537), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 506/564 (89%), Positives = 532/564 (94%), Gaps = 1/564 (0%)

Query: 5   NRRTRLTRYPLLIVLALLALLGLLVAKAAKAAEDYLPPEQAFQLTGRMVDAQTLELSYRI 64
           + R  L R PLL+ LA+LALLGLL AKAA+AAEDYLPPEQAFQL+GRMVDAQTLELSYRI
Sbjct: 8   DPRKPLPRLPLLMWLAVLALLGLLAAKAAQAAEDYLPPEQAFQLSGRMVDAQTLELSYRI 67

Query: 65  ADGYYMYRDRFHFSAEGATLGEPQFPAGKRKYDENFQKEVETYHQSVTARIPVSGAVKDF 124
           ADGYYMYRDRFHFSAEGATLGEPQFPAGKRKYDENFQ+EVETYHQSVTAR+PVSGAV  F
Sbjct: 68  ADGYYMYRDRFHFSAEGATLGEPQFPAGKRKYDENFQQEVETYHQSVTARVPVSGAVDKF 127

Query: 125 VISAVSQGCADKGLCYPPMTLKLAMSAQDIGKSVTPVGVNADAPG-AGGSDIDGIAAVLK 183
           V++AVSQGCADKGLCYPPMTLKL MSAQ IG+SV+P G      G AGGSDIDGIAAVLK
Sbjct: 128 VVAAVSQGCADKGLCYPPMTLKLTMSAQAIGQSVSPAGAEGAVQGSAGGSDIDGIAAVLK 187

Query: 184 GGKLWSILSLFFLLGIGLSFTPCVLPMLPILSSIIVGQQPGAGGGRARSFLLSVDYSLGM 243
           GGKLWSILSLFF+LGIGLSFTPCVLPMLPILSSIIVGQQP AGGGR RSFLLSV+YSLGM
Sbjct: 188 GGKLWSILSLFFVLGIGLSFTPCVLPMLPILSSIIVGQQPAAGGGRGRSFLLSVNYSLGM 247

Query: 244 ALVYTALGVAAGMLGEGLSAYLQNPWVLGAFAVLMAGLALSMFDLYTLQVPASLQSKLST 303
           ALVYT LGV AGMLGEGLSAYLQNPWVLGAFA+LMAGLALSMFDLYTLQVPASLQSKLST
Sbjct: 248 ALVYTGLGVVAGMLGEGLSAYLQNPWVLGAFALLMAGLALSMFDLYTLQVPASLQSKLST 307

Query: 304 ASGGGSGKWIGVFLMGAISALIVGPCVAAPLAGALLYISQTGNVVLGGSALFSMALGMSV 363
           ASGGGSGKW+GVFLMGAISALIVGPCVAAPLAGALLYISQTGNV+LGGSALF+MA+GMSV
Sbjct: 308 ASGGGSGKWLGVFLMGAISALIVGPCVAAPLAGALLYISQTGNVMLGGSALFAMAMGMSV 367

Query: 364 PLLLVGASAGALLPRAGAWMDAVKRFFGVLMLGTALWMVSPVIPSWLQVAGWAALGVGYG 423
           PLLL+GASAG LLPRAGAWMDAVKRFFGVLMLGTALWM+SPVIP+WLQVAGWAALGVGYG
Sbjct: 368 PLLLIGASAGTLLPRAGAWMDAVKRFFGVLMLGTALWMISPVIPAWLQVAGWAALGVGYG 427

Query: 424 AFLLWTRPAGWMSRALGLVVVTLGLLQLVSVATGGRDPLAPLSHLRGQSAAAQATDFVRI 483
           AFLLWTRPAGW++RA GLVVVTLGLLQLVS ATGGRDPLAPLSHLRGQSAAA ATDFVRI
Sbjct: 428 AFLLWTRPAGWIARAFGLVVVTLGLLQLVSAATGGRDPLAPLSHLRGQSAAAHATDFVRI 487

Query: 484 RSSAELDAALKENAAGERRPVMLDFYADWCVSCKEMERFTFTDARVKERFGQMLLLQIDV 543
           RSSAELDAAL++NAAGERRPVMLDFYADWCVSCKEMERFTFTD RVK RFGQMLLLQIDV
Sbjct: 488 RSSAELDAALQQNAAGERRPVMLDFYADWCVSCKEMERFTFTDERVKARFGQMLLLQIDV 547

Query: 544 TANNADDRAMLKRFNLFGPGHHVF 567
           TANNADDRAMLKRFNLFGP   +F
Sbjct: 548 TANNADDRAMLKRFNLFGPPGIMF 571


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.138    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,638,325
Number of extensions: 65515
Number of successful extensions: 297
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 295
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 1,619,870
Length adjustment: 91
Effective length of query: 511
Effective length of database: 1,188,985
Effective search space: 607571335
Effective search space used: 607571335
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 133 (55.8 bits)