BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0023.0019.p
         (379 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309488|ref|YP_003773580.1| 4-hydroxybutyrate dehydrogenase...   733   0.0  
gi|300313015|ref|YP_003777107.1| maleylacetate reductase [Herbas...    94   2e-20

>gi|300309488|ref|YP_003773580.1| 4-hydroxybutyrate dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 379

 Score =  733 bits (1891), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/379 (94%), Positives = 370/379 (97%)

Query: 1   MALINYITQVQFDYGALALLQQECDRLGIKKPLVVTDPGIRNAGLLDKVLGQLKDGAATV 60
           MALINYITQVQFDYGALALLQQECDRLGIKKPLVVTD GIRNAGLLDKVLGQLK+G   V
Sbjct: 1   MALINYITQVQFDYGALALLQQECDRLGIKKPLVVTDMGIRNAGLLDKVLGQLKEGVGAV 60

Query: 61  VYDQTPPNPNEGAVRAAVALFREHGCDGIVAVGGGSSIDLAKGVAVCGTHEGPLKSFALI 120
           VYDQTPPNPNEGAVRAAVALFR+HGCDGIVAVGGGSSIDLAKGVAVCGTHEGPLKSFALI
Sbjct: 61  VYDQTPPNPNEGAVRAAVALFRQHGCDGIVAVGGGSSIDLAKGVAVCGTHEGPLKSFALI 120

Query: 121 EGGLANITAKTAPVIAIPTTAGTGSEVGRGAILILDDGRKVGIISPHLVPKLALCDPELT 180
           EGGLANITAKTAPVIAIPTTAGTGSEVGRGAILILDDGRKVGIISP+LVPKLA+CDPELT
Sbjct: 121 EGGLANITAKTAPVIAIPTTAGTGSEVGRGAILILDDGRKVGIISPYLVPKLAICDPELT 180

Query: 181 LGLPPLMTAATGMDAIAHCLETFMAPAFNPPADGIALDGLWRAWAHIERATREPGDREAR 240
           LGLPPLMTAATGMDAIAHCLETFMAP+FNPPADGIALDGLWRAWAHIERATREPGDREAR
Sbjct: 181 LGLPPLMTAATGMDAIAHCLETFMAPSFNPPADGIALDGLWRAWAHIERATREPGDREAR 240

Query: 241 LNMMSASMQGAMAFQKGLGCVHSLSHSLGGINPKLHHGTLNAIFLPAIIAFNESAPSMVK 300
           LNMMSASMQGAMAFQKGLGCVHSLSHSLGGINP+LHHGTLNAIFLPAIIAFNESA SMVK
Sbjct: 241 LNMMSASMQGAMAFQKGLGCVHSLSHSLGGINPRLHHGTLNAIFLPAIIAFNESAASMVK 300

Query: 301 DNKMARMAHAMGLAGGAGIGPAIRDMSRRLGLPAGLRELGVSESLFPQIIKGALADHSHK 360
           DNKMARMAHAMGL  GA IGPAIR+MSRRLGLPAGL ELGV+ES+FPQII+GALADHSHK
Sbjct: 301 DNKMARMAHAMGLGSGAEIGPAIREMSRRLGLPAGLGELGVTESMFPQIIQGALADHSHK 360

Query: 361 TNPREASEQDYLNMLQQSM 379
           TNPREASEQDYL+MLQQSM
Sbjct: 361 TNPREASEQDYLHMLQQSM 379


>gi|300313015|ref|YP_003777107.1| maleylacetate reductase
           [Herbaspirillum seropedicae SmR1]
          Length = 356

 Score = 93.6 bits (231), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 101/372 (27%), Positives = 167/372 (44%), Gaps = 40/372 (10%)

Query: 9   QVQFDYGALALLQQECDRLGIKKPLVVTDPGIR-NAGLLDKVLGQLKDGAATVVYDQTPP 67
           +V F +G+L  L +E + LG ++ LV+  PG R  A  +  ++G    G    ++DQ   
Sbjct: 12  RVIFGHGSLQHLVRETELLGAQRALVLCTPGQRAEAERVAALIGARCAG----IFDQAVM 67

Query: 68  NPNEGAVRAAVALFREHGCDGIVAVGGGSSIDLAKGVAVCGTHEGPLKSFALIEGGLANI 127
           +      R A  + R  G D  +A+GGGS++ L K +A+    E  L             
Sbjct: 68  HVPIETARHAREVARALGADCAIAIGGGSTMGLGKAIAL----ESEL------------- 110

Query: 128 TAKTAPVIAIPTTAGTGSEVGRGAILILDDGRKVGIISPHLVPKLALCDPELTLGLPPLM 187
                P++AIPTT   GSE+      + + GRK       ++P+  + DP L+LGLP  +
Sbjct: 111 -----PILAIPTTYA-GSEM-TPIYGLTEAGRKKTGRDARVLPRTVIYDPALSLGLPLDL 163

Query: 188 TAATGMDAIAHCLETFMAPAFNPPADGIALDGLWRAWAHIERATREPGDREARLN-MMSA 246
           +  +G++A+AH  E   AP  NP    +A +GL      + +      D +AR   +  A
Sbjct: 164 SVTSGINAMAHAAEGLYAPDANPIMSLLAEEGLRALAEGLPQLAARADDIDARSRCLYGA 223

Query: 247 SMQGAMAFQKGLGCVHSLSHSLGGINPKLHHGTLNAIFLPAIIAFNESAPSMVKDNKMAR 306
            + G +    G+   H L H+LGG +  L H   + + LP       +  +      M R
Sbjct: 224 WLCGTVLGNVGMSLHHKLCHTLGG-SYNLPHAQTHTVILP----HALAYNAAAAPQAMQR 278

Query: 307 MAHAMGLAGGAGIGPAIRDMSRRLGLPAGLRELGVSESLFPQIIKGALADHSHKTNPREA 366
           +A A+G+   A     +  ++R L  P  L+ELG+      Q  + AL   +   NPR  
Sbjct: 279 IARALGVEDAA---QGVYALARALHAPLSLKELGMPYEALAQCTEIAL--QNAYANPRPL 333

Query: 367 SEQDYLNMLQQS 378
             +    +L+ +
Sbjct: 334 QREALHALLEDA 345


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.137    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,218,552
Number of extensions: 53509
Number of successful extensions: 168
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 164
Number of HSP's successfully gapped: 2
Length of query: 379
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 292
Effective length of database: 1,207,925
Effective search space: 352714100
Effective search space used: 352714100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)