BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0023.0011.p (220 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309495|ref|YP_003773587.1| cytochrome c553 protein [Herbas... 427 e-121 gi|300310720|ref|YP_003774812.1| cytochrome c553 protein [Herbas... 102 3e-23 gi|300310946|ref|YP_003775038.1| periplasmic cytochrome c553 pro... 57 1e-09 gi|300310945|ref|YP_003775037.1| periplasmic cytochrome c553 pro... 55 4e-09 >gi|300309495|ref|YP_003773587.1| cytochrome c553 protein [Herbaspirillum seropedicae SmR1] Length = 220 Score = 427 bits (1098), Expect = e-121, Method: Compositional matrix adjust. Identities = 203/220 (92%), Positives = 214/220 (97%) Query: 1 MNRAFSPLLYTVLAAVLAVSSAAHAADDKKAPIKADPAKGEALYTNGDNARNIVACVSCH 60 MNRAFSPLLY+V AA LAV+S AHAADDKKAP+KADPAKGEALYTNGD+ARNIVACVSCH Sbjct: 1 MNRAFSPLLYSVFAAFLAVASTAHAADDKKAPVKADPAKGEALYTNGDSARNIVACVSCH 60 Query: 61 GAAGNSTITQNPKLSGQHEAYIAKQLLNFRTPDRNNPVMSPLAKALSDEDIHNVAAYLAA 120 GAAGNSTITQNPKL+GQHEAYIAKQLLNFRTPDRNNPVMSP+AKALSDEDIHNVAA+LAA Sbjct: 61 GAAGNSTITQNPKLAGQHEAYIAKQLLNFRTPDRNNPVMSPMAKALSDEDIHNVAAFLAA 120 Query: 121 QAPKPGAAKNKDTIELGKHIWRGGIASKNVPACAGCHSPNGAGIPAQYPRLAGQHQDYTV 180 QAPKPGAAKNKDTI+LGKHIWR GIA+KNVPACAGCHSPNGAGIPAQYPRLAGQHQDYTV Sbjct: 121 QAPKPGAAKNKDTIDLGKHIWRAGIAAKNVPACAGCHSPNGAGIPAQYPRLAGQHQDYTV 180 Query: 181 AQLTNFRGGARTNSAQMTAIADRLSDKEIKAVADYIAGLK 220 AQLTNFRGGARTNS QMT I++RLSDKEIKAVADYIAGLK Sbjct: 181 AQLTNFRGGARTNSVQMTTISERLSDKEIKAVADYIAGLK 220 >gi|300310720|ref|YP_003774812.1| cytochrome c553 protein [Herbaspirillum seropedicae SmR1] Length = 252 Score = 102 bits (253), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 62/175 (35%), Positives = 94/175 (53%), Gaps = 7/175 (4%) Query: 50 ARNIVACVSCHGAAGNSTIT-QNPKLSGQHEAYIAKQLLNFRTPDRNNPVMSPLAKALSD 108 A + AC +CHG G +T P+++G+ EAY+ QL +FR R P+M+ L LSD Sbjct: 46 AERMAACTACHGKQGRATADGYYPRIAGKPEAYLLNQLQSFRDGQRRYPMMNYLLANLSD 105 Query: 109 EDIHNVAAYLAAQ-APKPGAAKNK---DTIELGKHIWRGGIASKNVPACAGCHSPNGAGI 164 + + +A + A Q P P A N+ +E G+ + G + +PACA CH+P+ G+ Sbjct: 106 DYLQQIARFFADQHPPYPPPASNEASATVLERGRRLVTEGDPQRRLPACAACHAPSLGGV 165 Query: 165 PAQYPRLAGQHQDYTVAQLTNFRGGARTNSAQ--MTAIADRLSDKEIKAVADYIA 217 P L G +DY AQL +R G RT M A+A LS +EI A + +++ Sbjct: 166 QPGIPGLLGLPRDYINAQLGAWRNGDRTAKTPDCMAAVARALSPEEINAASSWLS 220 >gi|300310946|ref|YP_003775038.1| periplasmic cytochrome c553 protein [Herbaspirillum seropedicae SmR1] Length = 117 Score = 57.0 bits (136), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 39/90 (43%), Positives = 48/90 (53%), Gaps = 13/90 (14%) Query: 35 ADPAKGEALYTNGDNARNIVACVSCHGAAGNS-TITQNPKLSGQHEAYIAKQLLNFRTPD 93 AD A G AL + C SCHG NS T PKL+GQH Y+ L +R + Sbjct: 24 ADVANGRALTEKYN-------CASCHGKDYNSPTEPAYPKLAGQHADYLKHALTAYRRGN 76 Query: 94 -----RNNPVMSPLAKALSDEDIHNVAAYL 118 RNN +MS AK LSD DI+++AAYL Sbjct: 77 TAMNGRNNAIMSAQAKPLSDRDINDIAAYL 106 >gi|300310945|ref|YP_003775037.1| periplasmic cytochrome c553 protein [Herbaspirillum seropedicae SmR1] Length = 106 Score = 55.1 bits (131), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 38/117 (32%), Positives = 56/117 (47%), Gaps = 20/117 (17%) Query: 10 YTVLAAVLAVSSAAHAADDKKAPIKADPAKGEALYTNGDNARNIVA-CVSCHGAAGNST- 67 + V A++ V +A AAD + N A N V+ C+ CHG G Sbjct: 4 HLVFLALVGVVGSASAAD---------------IVGNAKAAENKVSMCIGCHGIPGYKAS 48 Query: 68 ---ITQNPKLSGQHEAYIAKQLLNFRTPDRNNPVMSPLAKALSDEDIHNVAAYLAAQ 121 + Q P L GQ AYI L ++ +R +P M +A +LSD+DI ++AAY + Q Sbjct: 49 YPEVYQVPMLGGQSAAYIESALRAYQKGERKHPSMMGVAASLSDQDIADLAAYYSQQ 105 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.314 0.128 0.375 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 623,332 Number of extensions: 25151 Number of successful extensions: 125 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 121 Number of HSP's successfully gapped: 4 Length of query: 220 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 138 Effective length of database: 1,231,600 Effective search space: 169960800 Effective search space used: 169960800 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 129 (54.3 bits)