BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0023.0010.p
         (711 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309496|ref|YP_003773588.1| cytochrome C-type biogenesis tr...  1258   0.0  

>gi|300309496|ref|YP_003773588.1| cytochrome C-type biogenesis
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 688

 Score = 1258 bits (3256), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 629/689 (91%), Positives = 645/689 (93%), Gaps = 13/689 (1%)

Query: 29  MRFAISLLTLIAIASVIGTVMKQNEPMPNYVNQFGPFWFEIFGKAGLYAVYSAWWFLLIM 88
           MRFAISLLTLIAIASVIGTVMKQNEPMPNYVNQFGPFWFE+FGK GLYAVYSAWWFLLIM
Sbjct: 1   MRFAISLLTLIAIASVIGTVMKQNEPMPNYVNQFGPFWFEVFGKLGLYAVYSAWWFLLIM 60

Query: 89  GFLVLSTSLCIARNAPKMLRDVKSWRDNVREQSLRNFHHKHEWTTAEAPAEAAARLQRQV 148
           GFLVLSTSLCIARNAPKMLRDVKSWRDNVREQSLRNFHHKHEW TAEAPA+AAARL RQV
Sbjct: 61  GFLVLSTSLCIARNAPKMLRDVKSWRDNVREQSLRNFHHKHEWHTAEAPAQAAARLVRQV 120

Query: 149 GARGYKTKLADKEGGTLLAAKQGAANKWGYIFAHAAIVIICLGGLLDSDLPIRFQQWFYG 208
           GARGYKT+LADKEGGTLLAAKQGAANKWGYIFAHAAIVIICLGGLLDSDLPIRFQQWFYG
Sbjct: 121 GARGYKTRLADKEGGTLLAAKQGAANKWGYIFAHAAIVIICLGGLLDSDLPIRFQQWFYG 180

Query: 209 KSAFAGNGIISEIPERYRLGLNNPTFRGNTLIPEGSSSSTAIIPQKDGVMIQDLPFTIQL 268
           KSAF GNGII+EIPERYRLGLNNPTFRGNTLIPEGSSSSTAIIPQKDGVMIQDLPFTI+L
Sbjct: 181 KSAFTGNGIIAEIPERYRLGLNNPTFRGNTLIPEGSSSSTAIIPQKDGVMIQDLPFTIRL 240

Query: 269 KRFIIDFYSTGMPKLFASEVVVRDHETGKETAATIKVNEPLIYKGAAIYQSSFEDGGSKL 328
           KRFIIDFYSTGMPKLFASEVVVRDHETGKETAATIKVNEPLIY+G AIYQSSFEDGGSKL
Sbjct: 241 KRFIIDFYSTGMPKLFASEVVVRDHETGKETAATIKVNEPLIYQGVAIYQSSFEDGGSKL 300

Query: 329 KLVAYPMRGGSNSHFDLAGEVNGSTPLSSSSGDYTIEWSGFRPFNVENMQAAASGQASGS 388
           KLV YPMRGGSNSHF L+G VNGST L +  GDYTIEWSGFRPFNVENMQA+      GS
Sbjct: 301 KLVGYPMRGGSNSHFALSGVVNGSTALPAGLGDYTIEWSGFRPFNVENMQASGG---GGS 357

Query: 389 TSGDARAVNVGKNVNRGFMDGLDKHLGSSAKNANSKDFKNVGPSVQYKLRDKTGQAREYF 448
           TSGDARAVNVGK+VNRG MD LDKHLGSSAKNANSKDFKNVGPSVQYKLRDKTGQAREYF
Sbjct: 358 TSGDARAVNVGKSVNRGLMDSLDKHLGSSAKNANSKDFKNVGPSVQYKLRDKTGQAREYF 417

Query: 449 NYMQSLPIDGADVFLAGMREQPDQPFRYLRIPADDNDSVAEWMRLRAALANPALREEAAR 508
           NYMQSL IDGA VFLAGMREQPDQPFRYLRIPADDNDSVAEWMRLRAALANPALREEAAR
Sbjct: 418 NYMQSLSIDGAYVFLAGMREQPDQPFRYLRIPADDNDSVAEWMRLRAALANPALREEAAR 477

Query: 509 RYARQAISSGREASPVLREQLEQSALRGLTIFAGDGKVSGYIAVTRFLEQLPAAEQEKAA 568
           RYARQAIS+GREASPVLREQL+QSALRGLTIFAGDGKVSGYIAVTRFLEQLPAAEQEKAA
Sbjct: 478 RYARQAISNGREASPVLREQLQQSALRGLTIFAGDGKVSGYIAVTRFLEQLPAAEQEKAA 537

Query: 569 DIFMKILNGSMWELWQAARAQEGLAPVASDEKHGRYLQLAINALADAAFYPAPX------ 622
           DIFMKILNGSMWELWQAARAQ+GL PVASDE HGRYLQLAINALADAAFYPAP       
Sbjct: 538 DIFMKILNGSMWELWQAARAQDGLEPVASDEPHGRYLQLAINALADAAFYPAPVFLQLSS 597

Query: 623 ----RARALQVTRSPGKKVVYLGCLFLVLGVFAMLYIRERRLWIWIKPGPDGQGSQALLA 678
               +A  LQVTRSPGKKVVYLGCLFLVLGVFAMLYIRERRLWIWIKP  DGQGSQALLA
Sbjct: 598 FEEIKASVLQVTRSPGKKVVYLGCLFLVLGVFAMLYIRERRLWIWIKPAADGQGSQALLA 657

Query: 679 MSTQRRTLDFDKEFEQMKGRLTGAGQPAP 707
           MSTQRRTLDFDKEFEQMK R++G   P P
Sbjct: 658 MSTQRRTLDFDKEFEQMKARVSGDAAPPP 686


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.134    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,108,703
Number of extensions: 84265
Number of successful extensions: 258
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 256
Number of HSP's successfully gapped: 1
Length of query: 711
Length of database: 1,619,870
Length adjustment: 92
Effective length of query: 619
Effective length of database: 1,184,250
Effective search space: 733050750
Effective search space used: 733050750
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 134 (56.2 bits)