BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0023.0009.p
         (384 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309497|ref|YP_003773589.1| ABC transporter permease [Herba...   735   0.0  
gi|300309718|ref|YP_003773810.1| ABC transporter permease [Herba...    59   9e-10

>gi|300309497|ref|YP_003773589.1| ABC transporter permease
           [Herbaspirillum seropedicae SmR1]
          Length = 384

 Score =  735 bits (1898), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/384 (95%), Positives = 378/384 (98%)

Query: 1   MQLTQANQAYEQEQGFFRRLSLVDWIYAAALVAGSLYAFGRFGSYMDYYEKAVLLLAAPT 60
           M+LTQ NQAY +EQGFFRRL ++DWIYAAALVAGSLYAFGRFGSYMDYYEKAVLLLAAPT
Sbjct: 1   MELTQHNQAYAEEQGFFRRLGVLDWIYAAALVAGSLYAFGRFGSYMDYYEKAVLLLAAPT 60

Query: 61  FAWLGWHWKPVRLLMLVIAVLSLGAIAMYGGALELADKKFFLKYMLSSQSAILWMSALFC 120
           FAWLGWHWKPVRLLMLVIAVLSLGAIA+YGGALELADKKFFLKYMLSSQSAILWMSALFC
Sbjct: 61  FAWLGWHWKPVRLLMLVIAVLSLGAIALYGGALELADKKFFLKYMLSSQSAILWMSALFC 120

Query: 121 LSTLFYWGGLATTAGTGSAIGSRLCWAAVVLGFTGMMVRWYESYLIGADVGHIPISNLYE 180
           LSTLFYWGGLATTAGTG+AIGSRLCWAAVVLGFTG+MVRWYESYLIG DVGHIPISNLYE
Sbjct: 121 LSTLFYWGGLATTAGTGNAIGSRLCWAAVVLGFTGLMVRWYESYLIGPDVGHIPISNLYE 180

Query: 181 VFVLFCLITALFYLYYEERYATRQLGAFVLTVITAAVAFLMWYTVSRDAAEIQPLVPALQ 240
           VFVLFCLITALFYLYYEERYATRQLGAFVLTVITAAVAFLMWYTVSRDAAEIQPLVPALQ
Sbjct: 181 VFVLFCLITALFYLYYEERYATRQLGAFVLTVITAAVAFLMWYTVSRDAAEIQPLVPALQ 240

Query: 241 SWWMKIHVPANFIGYGTFALAAMVAVAYLLRERGILADRLPTLEVLDDVMYKAIAVGFAF 300
           SWWMKIHVPANFIGYGTFALAAMVAVAYLLR++G LADRLP+LEVLDDVMYKAIAVGFAF
Sbjct: 241 SWWMKIHVPANFIGYGTFALAAMVAVAYLLRQKGYLADRLPSLEVLDDVMYKAIAVGFAF 300

Query: 301 FTIATILGALWAAEAWGGYWSWDPKETWALIVWLNYAAWLHMRLMKGLRGRTAAWWALVG 360
           FTIATILGALWAAEAWGGYWSWDPKETWALIVWLNYAAWLHMRLMKGLRG+ AAWWALVG
Sbjct: 301 FTIATILGALWAAEAWGGYWSWDPKETWALIVWLNYAAWLHMRLMKGLRGQAAAWWALVG 360

Query: 361 LLVTTFAFLGVNMFLSGLHSYGEL 384
           LLVTTFAFLGVNMFLSGLHSYGEL
Sbjct: 361 LLVTTFAFLGVNMFLSGLHSYGEL 384


>gi|300309718|ref|YP_003773810.1| ABC transporter permease
           [Herbaspirillum seropedicae SmR1]
          Length = 270

 Score = 58.5 bits (140), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 72/152 (47%), Gaps = 15/152 (9%)

Query: 240 QSWWMKIHVPANFIGYGTFALAAMVAVAYLLRER---------------GILADRLPTLE 284
           +S W   H+  + + Y T  +AA  AV  +L+E                G+  DRLP L 
Sbjct: 111 KSDWFLAHIAISILAYSTLTIAAFHAVLMVLQESRLHTRPGLATQSGWFGLALDRLPALL 170

Query: 285 VLDDVMYKAIAVGFAFFTIATILGALWAAEAWGGYWSWDPKETWALIVWLNYAAWLHMRL 344
            ++ ++++ IA GF   T+  + G +++ + +G    WD K  + ++ WL +   L  R 
Sbjct: 171 TMEKLLFRLIAFGFTLLTLTVLSGVVFSEQLFGTPLKWDHKTIFTMLSWLLFGLLLAGRR 230

Query: 345 MKGLRGRTAAWWALVGLLVTTFAFLGVNMFLS 376
            +G RGRTA  + L G  +   A++G    L 
Sbjct: 231 WQGWRGRTALSFTLAGFAILLLAYVGSRFVLE 262


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.329    0.139    0.462 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,130,741
Number of extensions: 43714
Number of successful extensions: 213
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 212
Number of HSP's successfully gapped: 2
Length of query: 384
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 297
Effective length of database: 1,207,925
Effective search space: 358753725
Effective search space used: 358753725
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 131 (55.1 bits)