BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0023.0008.p
         (185 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309498|ref|YP_003773590.1| sugar transferase [Herbaspirill...   285   2e-78
gi|300309784|ref|YP_003773876.1| phosphatase/phosphohexomutase [...    76   1e-15

>gi|300309498|ref|YP_003773590.1| sugar transferase [Herbaspirillum
           seropedicae SmR1]
          Length = 215

 Score =  285 bits (729), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 139/176 (78%), Positives = 149/176 (84%)

Query: 1   MKQPNAAPELVIFDCDGTLVDSEVVAARAWSEYVATYGVTLSPDEALARFRGVSMKWCIS 60
           M     +P LVIFDCDGTLVDSEVVAARAWSEYVATYGV L+P++ALARFRGVSM WCI+
Sbjct: 1   MNDFATSPALVIFDCDGTLVDSEVVAARAWSEYVATYGVQLTPEDALARFRGVSMSWCIA 60

Query: 61  HIEQLHGQTLPDHFEQELRALMGGMLEQHLQPISGAVEMVEQLHLPFALASNAPHHKIEL 120
           H+ QL GQ LP HFEQELRA MG MLEQHLQPI+GA+EMVEQL +PFALASNAPHHKIEL
Sbjct: 61  HVAQLRGQALPAHFEQELRARMGVMLEQHLQPINGALEMVEQLQIPFALASNAPHHKIEL 120

Query: 121 CLRVTGLLPHFAGRIFSAYDVQRWKPDPALFLFAAERLGVPPRXQPAGRAGWPGCR 176
           CLRVTGLLPHF GRIFSAYDVQRWKPDPALFLFAAERLGVPP          PG +
Sbjct: 121 CLRVTGLLPHFHGRIFSAYDVQRWKPDPALFLFAAERLGVPPARCAVVEDSLPGVQ 176


>gi|300309784|ref|YP_003773876.1| phosphatase/phosphohexomutase
           [Herbaspirillum seropedicae SmR1]
          Length = 244

 Score = 76.3 bits (186), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/185 (32%), Positives = 84/185 (45%), Gaps = 17/185 (9%)

Query: 11  VIFDCDGTLVDSEVVAARAWSEYV-----ATYGVTLSPDEALARFRGVSMKWCISHIEQL 65
           +I DCDG L+DSE +A R     +     A  G   + D      R  ++   I+H   +
Sbjct: 10  LICDCDGVLLDSESIALRVLHRELLPLLPAWSGAGGADDGEQEEQRSAALHAAIAHRLGM 69

Query: 66  HGQTL----PDHFEQELRALMGGMLEQHLQ--------PISGAVEMVEQLHLPFALASNA 113
           +   L       FE  L A     + Q +         P+ G VE ++ + LP A+ASN+
Sbjct: 70  YTDILLGEVDMEFELGLDAAQAERIHQTVALACGDEALPVPGVVEALQAIRLPRAVASNS 129

Query: 114 PHHKIELCLRVTGLLPHFAGRIFSAYDVQRWKPDPALFLFAAERLGVPPRXQPAGRAGWP 173
              +IE  LR  GL P FAGRI+S +DV   KP P ++L AA   GV P    A      
Sbjct: 130 DAPRIEAGLRRCGLYPQFAGRIYSGHDVAHPKPAPDVYLAAAAGFGVDPSRCVAVDDSVT 189

Query: 174 GCRHA 178
           G R A
Sbjct: 190 GVRAA 194


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.138    0.444 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 688,569
Number of extensions: 29337
Number of successful extensions: 100
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 99
Number of HSP's successfully gapped: 3
Length of query: 185
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 105
Effective length of database: 1,241,070
Effective search space: 130312350
Effective search space used: 130312350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 128 (53.9 bits)