BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0023.0005.p
         (348 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309500|ref|YP_003773592.1| glycerol-3-phosphate dehydrogen...   475   e-135

>gi|300309500|ref|YP_003773592.1| glycerol-3-phosphate dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 334

 Score =  475 bits (1223), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 241/263 (91%), Positives = 247/263 (93%)

Query: 8   MKITILGAGAWGTALAIPLARKHQVVLWGRNAQAMQAASEQRENGLYLPGFALPPELAVS 67
           MKITILGAGAWGTALAIPLA KHQV LWGRNAQAMQAA  QREN LYLPGF LP  LAV+
Sbjct: 1   MKITILGAGAWGTALAIPLAHKHQVTLWGRNAQAMQAADRQRENSLYLPGFPLPEGLAVT 60

Query: 68  SDFDAAVRHVCDAPSDSLLIAASSVSGLRELAGHLRAYAIPNLVWLCKGLEEGTRLLPHQ 127
           +DFDAAVRHVCD P+DSLLIAASSVSGLRELAG LRAY IPNLVWLCKGLEEGTRLLPHQ
Sbjct: 61  ADFDAAVRHVCDDPADSLLIAASSVSGLRELAGQLRAYPIPNLVWLCKGLEEGTRLLPHQ 120

Query: 128 MVQEVLGSGVAAGVLSGPSFAQEVARGLPCALTIAGADAALCERVVAAVHGNNIRIYSSD 187
           +VQEVLG  +AAG LSGPSFAQEVARGLPCALTIAGADAALCERVVAAVHGNNIRIYSSD
Sbjct: 121 VVQEVLGPQLAAGALSGPSFAQEVARGLPCALTIAGADAALCERVVAAVHGNNIRIYSSD 180

Query: 188 DLVGVEIGGAVKNILAIATGVADGLQLGLNARAALITRGLAEITRLGVALGGRAETFMGL 247
           DL+GVEIGGAVKNILAIATGVADGL LGLNARAALITRGLAEITRLGVALGGR ETFMGL
Sbjct: 181 DLIGVEIGGAVKNILAIATGVADGLALGLNARAALITRGLAEITRLGVALGGRVETFMGL 240

Query: 248 SGVGDLILTCTGDLSRNRRVGLG 270
           SGVGDLILTCTGDLSRNRRVGLG
Sbjct: 241 SGVGDLILTCTGDLSRNRRVGLG 263


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.137    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,029,331
Number of extensions: 43394
Number of successful extensions: 208
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 208
Number of HSP's successfully gapped: 1
Length of query: 348
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 262
Effective length of database: 1,212,660
Effective search space: 317716920
Effective search space used: 317716920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)