BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0023.0001.p
         (137 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309504|ref|YP_003773596.1| transmembrane protein [Herbaspi...   266   5e-73
gi|300309823|ref|YP_003773915.1| rhodanese-related sulfurtransfe...    68   2e-13

>gi|300309504|ref|YP_003773596.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 137

 Score =  266 bits (679), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 131/137 (95%), Positives = 135/137 (98%)

Query: 1   VKFIIDNIFLIALALVSGGALLVPYLQQRGNKLSLLQATQMLNQGKVLVLDVREPEQFAA 60
           +KFIIDNIFLIALALVSGGALLVPYLQQRGNKLSLLQATQM+NQGKVLVLDVRE EQFAA
Sbjct: 1   MKFIIDNIFLIALALVSGGALLVPYLQQRGNKLSLLQATQMINQGKVLVLDVREAEQFAA 60

Query: 61  GHLRDARNIPLKELPQRISELDKLKGRPVIVVCQTGTQANRAEASLKKAGFTEVYGLNGG 120
           GHLRDARNIPLKELPQRI ELDKLKGRPVIVVCQTGTQANRAEA+LKKAGF+EVYGLNGG
Sbjct: 61  GHLRDARNIPLKELPQRIGELDKLKGRPVIVVCQTGTQANRAEATLKKAGFSEVYGLNGG 120

Query: 121 IAAWQGQGLPLTTKEAK 137
           IAAWQGQGLPLTTKEAK
Sbjct: 121 IAAWQGQGLPLTTKEAK 137


>gi|300309823|ref|YP_003773915.1| rhodanese-related
           sulfurtransferase [Herbaspirillum seropedicae SmR1]
          Length = 107

 Score = 68.2 bits (165), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 52/83 (62%), Gaps = 2/83 (2%)

Query: 48  LVLDVREPEQFAAGHLRDARNIPLKELPQRISELDKLKGRPVIVVCQTGTQANRAEASLK 107
           L+LDVREP +    H+  ++ +P+  +P R SELD+   +PV+ +C  G ++ +  A L+
Sbjct: 22  LLLDVREPWEHQTCHIAGSQLVPMNTIPGRFSELDE--EQPVVCICHHGGRSMQVAAFLE 79

Query: 108 KAGFTEVYGLNGGIAAWQGQGLP 130
           + GFT+V  L+GG+ AW  Q  P
Sbjct: 80  RQGFTKVINLSGGVHAWASQVDP 102


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.137    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 368,113
Number of extensions: 13301
Number of successful extensions: 53
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 2
Length of query: 137
Length of database: 1,619,870
Length adjustment: 76
Effective length of query: 61
Effective length of database: 1,260,010
Effective search space: 76860610
Effective search space used: 76860610
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)