BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0322.p
         (466 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309347|ref|YP_003773439.1| chromosomal replication initiat...   920   0.0  

>gi|300309347|ref|YP_003773439.1| chromosomal replication initiator
           protein [Herbaspirillum seropedicae SmR1]
          Length = 465

 Score =  920 bits (2377), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 452/466 (96%), Positives = 456/466 (97%), Gaps = 1/466 (0%)

Query: 1   MENFWQACSHKLEQELTPQQYSAWIKPLVPLDFEDGLLRIAAPNRFKLDWVKTQFANRIT 60
           MENFWQACS KLEQELTPQQYSAWIKPLVPLD+EDGLLR+AAPNRFKLDWVKTQFANRIT
Sbjct: 1   MENFWQACSQKLEQELTPQQYSAWIKPLVPLDYEDGLLRVAAPNRFKLDWVKTQFANRIT 60

Query: 61  ALACEFWDAPTEVQFVLDPRGNQGRRPAANAQANGGGASGLGLPNHEQLHLDPEPAQPVR 120
           ALACE+WDAPTEVQFVLDPRGNQGRRPAA A A  G +    LPNHEQLHLDPEPAQPVR
Sbjct: 61  ALACEYWDAPTEVQFVLDPRGNQGRRPAAAAAAGNGASGLG-LPNHEQLHLDPEPAQPVR 119

Query: 121 AVAPRQEQSRINPVLTFDNLVTGKANQLARAAATQVANNPGTSYNPLFLYGGVGLGKTHI 180
           AVAPRQEQSRINPVLTFDNLVTGKANQLARAAATQVANNPGTSYNPLFLYGGVGLGKTHI
Sbjct: 120 AVAPRQEQSRINPVLTFDNLVTGKANQLARAAATQVANNPGTSYNPLFLYGGVGLGKTHI 179

Query: 181 IHAIGNQVLVDNPGAKIRYIHAEQYVRDVVTAYQRKGFDDFKRYYHSLDLLLIDDIQFFG 240
           IHAIGNQVLVDNPGAKIRYIHAEQYVRDVVTAYQRKGFDDFKRYYHSLDLLLIDDIQFFG
Sbjct: 180 IHAIGNQVLVDNPGAKIRYIHAEQYVRDVVTAYQRKGFDDFKRYYHSLDLLLIDDIQFFG 239

Query: 241 GKSRTQEEFFYAFEALIAAKKQIIITSDTYPKEISGMDDRLISRFDSGLTVAIEPPELEM 300
           GKSRTQEEFFYAFEALIAAKKQIIITSDTYPKEISGMDDRLISRFDSGLTVAIEPPELEM
Sbjct: 240 GKSRTQEEFFYAFEALIAAKKQIIITSDTYPKEISGMDDRLISRFDSGLTVAIEPPELEM 299

Query: 301 RVAILMKKASAEDVVLSDDVAFFVAKHLRSNVRELEGALRKILAYSRFHGKDITIDVVKE 360
           RVAILMKKASAEDVVLSDDVAFFVAKHLRSNVRELEGALRKILAYSRFHGKDITIDVVKE
Sbjct: 300 RVAILMKKASAEDVVLSDDVAFFVAKHLRSNVRELEGALRKILAYSRFHGKDITIDVVKE 359

Query: 361 ALKDLLSVQNRQISVENIQKTVADFFNIKVADMYSKKRPANIARPRQIAMYLAKELTQKS 420
           ALKDLLSVQNRQISVENIQKTVADFFNIKVADMYSKKRPANIARPRQIAMYLAKELTQKS
Sbjct: 360 ALKDLLSVQNRQISVENIQKTVADFFNIKVADMYSKKRPANIARPRQIAMYLAKELTQKS 419

Query: 421 LPEIGDLFGGRDHTTVLHAVRKIAADRAKSPECNHELHVLEQTLKG 466
           LPEIGDLFGGRDHTTVLHAVRKIAADRAKSPECNHELHVLEQTLKG
Sbjct: 420 LPEIGDLFGGRDHTTVLHAVRKIAADRAKSPECNHELHVLEQTLKG 465


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.136    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,334,470
Number of extensions: 51300
Number of successful extensions: 165
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 164
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 377
Effective length of database: 1,198,455
Effective search space: 451817535
Effective search space used: 451817535
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)