BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0320.p
         (249 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300314081|ref|YP_003778173.1| glutamine amidotransferase [Her...   493   e-141

>gi|300314081|ref|YP_003778173.1| glutamine amidotransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 255

 Score =  493 bits (1269), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 234/249 (93%), Positives = 243/249 (97%)

Query: 1   MNCNTPTDIVFSFTGFATRGGLTDHHRDGWGIAFFEGSGVRTFVDHQAAVESPVAELIKR 60
           MNCNTPTDIVFSFTGFATRGGLTDHHRDGWGIAFFEGSGVRTFVDHQAAV+SPVAELIKR
Sbjct: 7   MNCNTPTDIVFSFTGFATRGGLTDHHRDGWGIAFFEGSGVRTFVDHQAAVDSPVAELIKR 66

Query: 61  YPIKSQHVIAHIRKATQGRVTLANCHPFVRELWGRYWVFAHNGDLKNFTPTLDGPFRPVG 120
           YPIKSQHVIAHIRKATQGRVTLANCHPFVRELWGRYWVFAHNGDLKNFTP LDGP+RPVG
Sbjct: 67  YPIKSQHVIAHIRKATQGRVTLANCHPFVRELWGRYWVFAHNGDLKNFTPELDGPYRPVG 126

Query: 121 TTDSELAFCFILQEMRKRFGDTLPLLADLRVALREIVDGIASHGTFNMLLSDGSALYTHC 180
           TTDSELAFC+ILQEMRKRFG TLPLLA+LR ALREIVD IA HGTFNMLLSDGSALYTHC
Sbjct: 127 TTDSELAFCYILQEMRKRFGHTLPLLAELRAALREIVDHIAGHGTFNMLLSDGSALYTHC 186

Query: 181 STNLYYIVRQHPFAKAKLSDEDLSVDFSEVTTTNDRVAVIVTQPLTDNEVWTQYQTGEMK 240
           ST+LYYIVRQHPFA AKLSD+DLSVDFSEVTT+NDRVAVIVTQPLTDNEVWTQYQ+GEMK
Sbjct: 187 STHLYYIVRQHPFATAKLSDDDLSVDFSEVTTSNDRVAVIVTQPLTDNEVWTQYQSGEMK 246

Query: 241 VFVDGAVVD 249
           VFVDGAVV+
Sbjct: 247 VFVDGAVVE 255


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.138    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 804,767
Number of extensions: 32689
Number of successful extensions: 70
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 70
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 166
Effective length of database: 1,226,865
Effective search space: 203659590
Effective search space used: 203659590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 129 (54.3 bits)