BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0317.p (182 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300314079|ref|YP_003778171.1| LysR family transcription regul... 348 2e-97 gi|300313281|ref|YP_003777373.1| LysR family transcription regul... 80 1e-16 gi|300310812|ref|YP_003774904.1| LysR family transcription regul... 71 4e-14 gi|300310675|ref|YP_003774767.1| LysR family transcription regul... 70 7e-14 gi|300310448|ref|YP_003774540.1| transcription regulator protein... 68 3e-13 >gi|300314079|ref|YP_003778171.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 319 Score = 348 bits (892), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 167/169 (98%), Positives = 169/169 (100%) Query: 1 VIRTAHGVKPTPRAEELWPTVRRALSELEAVIAPESFDISRAQNTFRMAMVDATAALWLP 60 VIRTAHGVKPTPRAEELWPTVRRALSELEAVIAPESFDISRAQNTFRMAMVDATAALWLP Sbjct: 53 VIRTAHGVKPTPRAEELWPTVRRALSELEAVIAPESFDISRAQNTFRMAMVDATAALWLP 112 Query: 61 SLVRTIMRDAPRIKIRMMPLTTRDPRAMLLRGDIDLAVGFFPGVTAQLADGQGMAKSQIS 120 SLVRTIMRDAPRIKIRMMPLTTRDPRAMLLRGDIDLAVGFFPGVTAQLADGQGMAKSQIS Sbjct: 113 SLVRTIMRDAPRIKIRMMPLTTRDPRAMLLRGDIDLAVGFFPGVTAQLADGQGMAKSQIS 172 Query: 121 HARLYTGQYVCVMHKNHPLAGQPLTLDSYCSADHLLVSLSGKPHAVIDD 169 HARLYTGQYVCVMHK+HPLAGQPLTLDSYC+ADHLLVSLSGKPHAVIDD Sbjct: 173 HARLYTGQYVCVMHKSHPLAGQPLTLDSYCNADHLLVSLSGKPHAVIDD 221 >gi|300313281|ref|YP_003777373.1| LysR family transcription regulator [Herbaspirillum seropedicae SmR1] Length = 323 Score = 80.1 bits (196), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 80/162 (49%), Gaps = 11/162 (6%) Query: 2 IRTAHGVKPTPRAEELWPTVRRALSELEA-VIAPESFDISRAQNTFRMAMVDATAALWLP 60 ++T G++PTPRA L R L + A V++ + F + F +A+ D + LP Sbjct: 52 VKTGRGMQPTPRAVSLIGPTREILQRVHAEVLSSDQFTPATTTKRFVLALSDIGELMLLP 111 Query: 61 SLVRTIMRDAPRIKIRMMPLTTRDPRAMLLRGDIDLAVGFFPGVTAQLADGQGMAKSQIS 120 L+ I +AP + + + + A L G++DLA+G+FP + Sbjct: 112 RLLERIRDEAPHASVVTVTMAPAELVAALESGEVDLAIGYFP----------DLRNRNFF 161 Query: 121 HARLYTGQYVCVMHKNHPLAGQPLTLDSYCSADHLLVSLSGK 162 RL++ +VC++ HPL Q ++L+ Y +A H++V G+ Sbjct: 162 QQRLFSQDFVCLLRAGHPLPAQKISLEHYQAAGHIVVKAEGR 203 >gi|300310812|ref|YP_003774904.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 311 Score = 71.2 bits (173), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 49/169 (28%), Positives = 81/169 (47%), Gaps = 12/169 (7%) Query: 2 IRTAHGVKPTPRAEELWPTVRRALSEL-EAVIAPESFDISRAQNTFRMAMVDATAALWLP 60 +R+ + PT A L + RAL L EA+ FD + A TF + M D + + LP Sbjct: 57 VRSTSAMVPTETAIRLHEPIARALDILQEALHTHAQFDPATATRTFHLVMSDMSCSHVLP 116 Query: 61 SLVRTIMRDAPRIKIRMMPLTTRDPRAMLLRGDIDLAVGFFPGVTAQLADGQGMAKSQIS 120 L+ + AP + I + + + A + GD+DLA G+ PG+ +SQ+ Sbjct: 117 LLMEELAHAAPHVSIEVQQMAMENLGAAMRNGDVDLAFGYLPGLPED-------CQSQLV 169 Query: 121 HARLYTGQYVCVMHKNHPLAGQPLTLDSYCSADHLLVSLSGKPHAVIDD 169 LY Y+C++ + HPLA PLTL++ ++ + H + +D Sbjct: 170 ---LY-DDYICMLRREHPLAQGPLTLENLLQLRYVYTVTNTTGHQLAED 214 >gi|300310675|ref|YP_003774767.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 309 Score = 70.5 bits (171), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 47/170 (27%), Positives = 79/170 (46%), Gaps = 13/170 (7%) Query: 2 IRTAHGVKPTPRAEELWPTVRRALSELE-AVIAPESFDISRAQNTFRMAMVDATAALWLP 60 IRT G++PTP A EL + RAL ++ A+ E FD +++ FR +M D ++LP Sbjct: 55 IRTKEGMQPTPAALELAKPINRALQAVQDALRYTERFDPAQSTRVFRASMTDVAEMMFLP 114 Query: 61 SLVRTIMRDAPRIKIRMMPLTTRDPRAMLLRGDIDLAVGFFPGVTAQLADGQGMAKSQIS 120 L + AP +++++ + L G +D A G P + K Sbjct: 115 DLCEILTAQAPDVRLQVEQVPPAHLEEALRTGQLDFAFGNLPAL-----------KPVTC 163 Query: 121 HARLYTGQYVCVMHKNHPLAGQ-PLTLDSYCSADHLLVSLSGKPHAVIDD 169 H L+ YVC+M + L + L LD + + H+LV + H +++ Sbjct: 164 HELLFRETYVCLMRQRDGLPQRAQLELDEFLAMSHVLVESAESSHHQVEN 213 >gi|300310448|ref|YP_003774540.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 306 Score = 68.2 bits (165), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 81/172 (47%), Gaps = 15/172 (8%) Query: 2 IRTAHGVKPTPRAEELWPTVRRALSEL-EAVIAPESFDISRAQNTFRMAMVDATAALWLP 60 +RTA G++PTP AE+L V AL ++ A+ E F + F +AM D ++P Sbjct: 57 VRTAQGMQPTPFAEQLAEPVAAALQQVARALNLQEGFAPQTSARRFTIAMTDVGEVYFMP 116 Query: 61 SLVRTIMRDAPRIKIRMMPLTTRDPRAMLLRGDIDLAVGFFPGVTAQLADGQGMAKSQIS 120 +L+ R AP + I + D ++ + G +DLA+G F ++ L Sbjct: 117 ALIEACARCAPGVSISTVRAGAIDLKSEMESGRVDLAIGAFDNLSEAL-----------Y 165 Query: 121 HARLYTGQYVCVMHKNHPL---AGQPLTLDSYCSADHLLVSLSGKPHAVIDD 169 RL+ +YV + H L ++L + +A+HL+VS P+ I+ Sbjct: 166 QRRLFRQEYVSMFRIGHALDKPGRGEVSLKEFLAAEHLMVSSQESPYDRINQ 217 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.135 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 584,432 Number of extensions: 22844 Number of successful extensions: 104 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 101 Number of HSP's successfully gapped: 7 Length of query: 182 Length of database: 1,619,870 Length adjustment: 80 Effective length of query: 102 Effective length of database: 1,241,070 Effective search space: 126589140 Effective search space used: 126589140 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 127 (53.5 bits)