BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0314.p
         (100 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300314077|ref|YP_003778169.1| ferredoxin [2Fe-2S]-type protei...   154   1e-39
gi|300312623|ref|YP_003776715.1| chaperone activity ATPase [Herb...    63   4e-12

>gi|300314077|ref|YP_003778169.1| ferredoxin [2Fe-2S]-type protein
          [Herbaspirillum seropedicae SmR1]
          Length = 100

 Score =  154 bits (389), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 78/99 (78%), Positives = 79/99 (79%)

Query: 1  MDSKKPFLIAIQPSGLQFEQVAGLSVLQSGLRVGIRLPNSCRNGTCRTCMCKLFTGEIAY 60
          M S   FL+ IQPSGLQFEQV G SVL S L   IRLPNSCRNGTCRTCMCKL TG I Y
Sbjct: 1  MSSSIRFLVRIQPSGLQFEQVPGRSVLLSALSASIRLPNSCRNGTCRTCMCKLSTGRIDY 60

Query: 61 QIEWPGLTREEKAEGWILPCVAEARSDLVLDVPAAVDLK 99
          QIEWPGLTREEKAEGWILPCVAEA SDL L VP AVD K
Sbjct: 61 QIEWPGLTREEKAEGWILPCVAEAASDLELLVPDAVDPK 99


>gi|300312623|ref|YP_003776715.1| chaperone activity ATPase
          [Herbaspirillum seropedicae SmR1]
          Length = 349

 Score = 63.2 bits (152), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 51/86 (59%), Gaps = 1/86 (1%)

Query: 7  FLIAIQPSGLQFEQVAGLSVLQSGLRVGIRLPNSCRNGTCRTCMCKLFTGEIAY-QIEWP 65
          F + +QPSG QF   A  S+L + +R G+ LP  C+NG C +C  KL +G++ +   +  
Sbjct: 3  FQVTVQPSGRQFTCDADESILTAAIRAGVGLPYGCKNGACSSCKGKLVSGQVEHGPHQER 62

Query: 66 GLTREEKAEGWILPCVAEARSDLVLD 91
           L+  E+  G  L CVA+ +SD+ ++
Sbjct: 63 ALSAHEQQLGMALFCVAKPQSDVTIE 88


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.138    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 312,441
Number of extensions: 11301
Number of successful extensions: 28
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 2
Length of query: 100
Length of database: 1,619,870
Length adjustment: 69
Effective length of query: 31
Effective length of database: 1,293,155
Effective search space: 40087805
Effective search space used: 40087805
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 123 (52.0 bits)