BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0305.p (160 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300314069|ref|YP_003778161.1| amino acid ABC transporter perm... 231 2e-62 gi|300312953|ref|YP_003777045.1| amino acid ABC transporter perm... 77 5e-16 gi|300311771|ref|YP_003775863.1| branched-chain amino acid ABC t... 61 4e-11 gi|300313285|ref|YP_003777377.1| branched-chain amino acid ABC t... 60 1e-10 gi|300313933|ref|YP_003778025.1| branched-chain amino acid ABC t... 59 2e-10 >gi|300314069|ref|YP_003778161.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 326 Score = 231 bits (590), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 134/151 (88%), Positives = 140/151 (92%), Gaps = 6/151 (3%) Query: 1 MNKKIGIAVLLILLLAAPFGIYPVFLMKMLCFALFACAFNLLIGYTGLLSFGHAAFLGWA 60 MNKKIGIAVLLILLLAAPFGIYPVFLMKMLCFALFACAFNLLIGYTGLLSFGHAAFLGWA Sbjct: 1 MNKKIGIAVLLILLLAAPFGIYPVFLMKMLCFALFACAFNLLIGYTGLLSFGHAAFLGWA 60 Query: 61 GYLCGQSLKVWGLPTELGLIIGTLTGALIGLVMGLLAIRRQGIYFTMITLALAQMLFFVA 120 GY+CGQ+LKVWGLPTELGLIIGTLTGALIGLVMGLLAIRRQGIYFTMITLALAQMLFFVA Sbjct: 61 GYMCGQALKVWGLPTELGLIIGTLTGALIGLVMGLLAIRRQGIYFTMITLALAQMLFFVA 120 Query: 121 LQAPFTGGEDGAQ------MLFFVALQAPFT 145 LQAPFTGGEDG Q +L F+ L++ T Sbjct: 121 LQAPFTGGEDGLQGVPRGKLLGFLNLESDMT 151 >gi|300312953|ref|YP_003777045.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 317 Score = 77.4 bits (189), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 42/110 (38%), Positives = 71/110 (64%), Gaps = 2/110 (1%) Query: 26 LMKMLCFALFACAFNLLIGYTGLLSFGHAAFLGWAGYLCGQSLKVWGLPTE-LGLIIGTL 84 L ++L FA+ A + N ++GY G++SFGHA F G Y+ + G+ + L ++ L Sbjct: 32 LTRILIFAMVAASLNFILGYGGMVSFGHAVFFGLGAYVTAIA-SFHGVTSAWLIWLLAAL 90 Query: 85 TGALIGLVMGLLAIRRQGIYFTMITLALAQMLFFVALQAPFTGGEDGAQM 134 AL+GLV+G++A+R + +YF MIT+ALAQ+ ++ + + GG+DG Q+ Sbjct: 91 VTALVGLVIGVIALRTRAVYFIMITMALAQLFYYFFVGFRYYGGDDGLQV 140 >gi|300311771|ref|YP_003775863.1| branched-chain amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 628 Score = 61.2 bits (147), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 39/114 (34%), Positives = 59/114 (51%), Gaps = 1/114 (0%) Query: 19 FGIYPVFLMKMLCFALFACAFNLLIGYTGLLSFGHAAFLGWAGYLCGQSLKVWGLPTELG 78 F PV ++++L LFA + + L+G G++SFGHAA+ G Y P L Sbjct: 344 FPYLPVLMVEILVAVLFAASLHFLMGPGGMVSFGHAAYFGLGAYAAALVTLRLQWPMPLA 403 Query: 79 LIIGTLTGALIGLVMGLLAIRRQGIYFTMITLALAQMLFFVALQ-APFTGGEDG 131 ++ G T L L+ G +R G+Y M+TLA AQ+++ Q TGG +G Sbjct: 404 MLAGAGTAMLAALLFGWFCVRLSGVYLAMLTLAFAQIVWAAIYQWDDLTGGSNG 457 >gi|300313285|ref|YP_003777377.1| branched-chain amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 338 Score = 59.7 bits (143), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 46/130 (35%), Positives = 74/130 (56%), Gaps = 6/130 (4%) Query: 7 IAVLLILLLAAPFGIYPVFLM---KMLCFALFACAFNLLIGYTGLLSFGHAAFLGWAGYL 63 + +L LL A + I+P +L+ +++ LFA + +L++GY G++S GHAAF G Y Sbjct: 29 LEILFWLLPVAAYFIFPDYLVLISQIMIVGLFAVSLDLILGYAGIVSLGHAAFFGLGAYT 88 Query: 64 CG-QSLKVWGLPTELGLIIGTLTGALIGLVMGLLAIRRQGIYFTMITLALAQMLFFVALQ 122 G ++ WG P GL++ + A+ G ++ L +R + M+TL + MLF A + Sbjct: 89 AGLLAVHGWGEPIT-GLLLAAVVAAIAGFLVSFLVVRGADLTRLMVTLGIGLMLFEAANK 147 Query: 123 APF-TGGEDG 131 A F TGG DG Sbjct: 148 AAFITGGVDG 157 >gi|300313933|ref|YP_003778025.1| branched-chain amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 334 Score = 59.3 bits (142), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 47/105 (44%), Positives = 63/105 (60%), Gaps = 1/105 (0%) Query: 28 KMLCFALFACAFNLLIGYTGLLSFGHAAFLGWAGYLCGQSLKVWGLPTELGLIIGTLTGA 87 ++L FAL A NLL+GYTGL+SFG F G Y G L L L + L GA Sbjct: 32 EVLVFALAALGCNLLLGYTGLMSFGQGIFFGVGSYTAGVVLLQLKLALLPALALAALGGA 91 Query: 88 LIGLVMGLLAIRRQGIYFTMITLALAQMLFFVALQ-APFTGGEDG 131 L+ L++G +IR++G YF M+TLA AQM +F+A TGG++G Sbjct: 92 LVALLVGWFSIRQRGTYFVMLTLAFAQMFYFLAYTMKDVTGGDNG 136 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.332 0.146 0.470 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 411,579 Number of extensions: 13379 Number of successful extensions: 83 Number of sequences better than 1.0e-08: 13 Number of HSP's gapped: 77 Number of HSP's successfully gapped: 13 Length of query: 160 Length of database: 1,619,870 Length adjustment: 78 Effective length of query: 82 Effective length of database: 1,250,540 Effective search space: 102544280 Effective search space used: 102544280 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 127 (53.5 bits)