BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0303.p
         (175 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309403|ref|YP_003773495.1| nitrate/sulfonate/bicarbonate A...   186   7e-49
gi|300311839|ref|YP_003775931.1| nitrate/sulfonate/bicarbonate A...   127   7e-31

>gi|300309403|ref|YP_003773495.1| nitrate/sulfonate/bicarbonate ABC
           transporter periplasmic protein [Herbaspirillum
           seropedicae SmR1]
          Length = 342

 Score =  186 bits (473), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 83/176 (47%), Positives = 122/176 (69%), Gaps = 1/176 (0%)

Query: 1   VFGKEDFKRFDSISVSLSHPDATAALIAGGSEINAHFSSPPFQYQALE-NKNVHKVISSY 59
           ++G   + R D IS+++ HPDATAA+I+GG+EI  HF +PPFQ Q L  N N H V+ SY
Sbjct: 167 LWGDAQYNRLDKISIAVPHPDATAAIISGGTEITGHFGNPPFQEQELAGNPNAHIVLKSY 226

Query: 60  DIMGGPATFNVLYTTQKFHDENPKTYRAFYKALVEAAEFVRNNKAKAADTFIRVQKSKLS 119
           D++GGP++  VLY T+KF  +NPKTYRAF  AL E A F+R N  KAAD +++V K    
Sbjct: 227 DVLGGPSSATVLYATEKFRKDNPKTYRAFLDALEETASFIRANPDKAADIYLKVNKGNTD 286

Query: 120 PAFVRKIVEDPEINFTVSPERTFVYAEQLHALGVLKNRASSWKDYFFEEAYAQPGS 175
              + +I+++PE+ F ++P+ T+  AE +H +G +KN+ +S KDYFF++ + Q GS
Sbjct: 287 RKLLLQIIKNPEVQFKIAPQNTYGLAEFMHRVGAIKNKPASVKDYFFDDPHVQGGS 342


>gi|300311839|ref|YP_003775931.1| nitrate/sulfonate/bicarbonate ABC
           transporter periplasmic protein [Herbaspirillum
           seropedicae SmR1]
          Length = 341

 Score =  127 bits (318), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 61/164 (37%), Positives = 99/164 (60%), Gaps = 1/164 (0%)

Query: 2   FGKEDFKRFDSISVSLSHPDATAALIAGGSEINAHFSSPPFQYQALENKNVHKVISSYDI 61
           FG E++ + D ++VSLSHP+A A+L++G +EI AHF+SPPF YQ  +   + +V++S D+
Sbjct: 169 FGIENYAKLDPLTVSLSHPEAMASLVSGKTEITAHFTSPPFSYQEAKAPGITRVLNSTDV 228

Query: 62  MGGPATFNVLYTTQKFHDENPKTYRAFYKALVEAAEFVRNNKAKAADTFIRVQKSKLSPA 121
           +G   T +V++  + F D+NPK  +AF  A  EA  ++  N+  AA+ F+RV K KL   
Sbjct: 229 LGH-ITIDVVFALKSFTDKNPKLTQAFMAAQEEANAYIAKNRKGAAEIFLRVSKLKLPQE 287

Query: 122 FVRKIVEDPEINFTVSPERTFVYAEQLHALGVLKNRASSWKDYF 165
            V +++ DP   FT +P     Y   +   G +K + + W + F
Sbjct: 288 EVEQMLADPGTEFTSTPVDIMQYVVFMSKAGTIKTKPAVWHEMF 331


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.131    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 530,744
Number of extensions: 18527
Number of successful extensions: 40
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 38
Number of HSP's successfully gapped: 2
Length of query: 175
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 96
Effective length of database: 1,245,805
Effective search space: 119597280
Effective search space used: 119597280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 127 (53.5 bits)