BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0302.p
         (156 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309403|ref|YP_003773495.1| nitrate/sulfonate/bicarbonate A...   129   1e-31
gi|300311839|ref|YP_003775931.1| nitrate/sulfonate/bicarbonate A...    79   2e-16

>gi|300309403|ref|YP_003773495.1| nitrate/sulfonate/bicarbonate ABC
           transporter periplasmic protein [Herbaspirillum
           seropedicae SmR1]
          Length = 342

 Score =  129 bits (323), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 59/100 (59%), Positives = 76/100 (76%)

Query: 32  GSAASVHAEGTIRIAQQFGIGYLILDVVQDQKLIEKYGKQEGVDIKVEWTSLSGATGMNE 91
           G+     AEG +RIA+QFGI YL+L+V QDQ+LIEK+GK  GVDIKVEW  LSG + +N+
Sbjct: 25  GAPLMARAEGQLRIAEQFGIVYLLLNVAQDQQLIEKHGKAAGVDIKVEWLKLSGGSAIND 84

Query: 92  ALLAGALDVVSAGAPPALVLWDRTRGRQNVKAIASLGSMP 131
           ALL+G++D+  AG  P L +WDRT GRQNV+  ASLG+ P
Sbjct: 85  ALLSGSVDIAGAGVGPLLTIWDRTYGRQNVRGAASLGNFP 124


>gi|300311839|ref|YP_003775931.1| nitrate/sulfonate/bicarbonate ABC
           transporter periplasmic protein [Herbaspirillum
           seropedicae SmR1]
          Length = 341

 Score = 79.0 bits (193), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 43/113 (38%), Positives = 68/113 (60%), Gaps = 5/113 (4%)

Query: 24  MLAGVIAL-GSAASVHAEG-TIRIAQQFGIGYLILDVVQDQKLIEKYGKQEGV-DIKVEW 80
           M+A  +AL G + + HAE   +RI+  +G+ YL L V++DQ L+EK+ K  G+ ++K +W
Sbjct: 13  MIASALALSGVSGTAHAEAQEVRISHGYGLLYLPLMVIRDQNLVEKHAKAMGLGEVKTKW 72

Query: 81  TSLSGATGMNEALLAGALDVVSAGAPPALVLWDRTRG--RQNVKAIASLGSMP 131
             L G   +N+A+LAG LD+   GAP  + LW +  G  R  V  + +L + P
Sbjct: 73  VLLDGGNVINDAMLAGNLDIAGTGAPGFVTLWSKAHGIPRSEVVGLGALSTSP 125


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.129    0.363 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 401,573
Number of extensions: 15715
Number of successful extensions: 66
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 2
Length of query: 156
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 78
Effective length of database: 1,250,540
Effective search space: 97542120
Effective search space used: 97542120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)