BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0301.p
         (229 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309403|ref|YP_003773495.1| nitrate/sulfonate/bicarbonate A...   444   e-126
gi|300311839|ref|YP_003775931.1| nitrate/sulfonate/bicarbonate A...   162   3e-41

>gi|300309403|ref|YP_003773495.1| nitrate/sulfonate/bicarbonate ABC
           transporter periplasmic protein [Herbaspirillum
           seropedicae SmR1]
          Length = 342

 Score =  444 bits (1142), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 216/229 (94%), Positives = 221/229 (96%)

Query: 1   VRGVASLGNFPYYLVSNNPKVKTIADFGDKDRIAVPAVGVSVQSRVLQLASAKLWGDAQY 60
           VRG ASLGNFPYYLVSNNPKVKTIADF DKDRIA+PAVGVSVQSRVLQLASAKLWGDAQY
Sbjct: 114 VRGAASLGNFPYYLVSNNPKVKTIADFSDKDRIALPAVGVSVQSRVLQLASAKLWGDAQY 173

Query: 61  NKLDKVSIAVPHPDATAAIISGGTEITGHFGNPPFQEQELAGNPNAHIVLKSYDVLGGPS 120
           N+LDK+SIAVPHPDATAAIISGGTEITGHFGNPPFQEQELAGNPNAHIVLKSYDVLGGPS
Sbjct: 174 NRLDKISIAVPHPDATAAIISGGTEITGHFGNPPFQEQELAGNPNAHIVLKSYDVLGGPS 233

Query: 121 SATVLYATEKFRKDNPKTYGAFLGALDEAAKFISANPEKAADIYLKVNKGNTDRKLLLQI 180
           SATVLYATEKFRKDNPKTY AFL AL+E A FI ANP+KAADIYLKVNKGNTDRKLLLQI
Sbjct: 234 SATVLYATEKFRKDNPKTYRAFLDALEETASFIRANPDKAADIYLKVNKGNTDRKLLLQI 293

Query: 181 IKNPEVQFKIAPQNTYGLAEFMHRVGAIKNKPASVKDYFFDDAHVQGGS 229
           IKNPEVQFKIAPQNTYGLAEFMHRVGAIKNKPASVKDYFFDD HVQGGS
Sbjct: 294 IKNPEVQFKIAPQNTYGLAEFMHRVGAIKNKPASVKDYFFDDPHVQGGS 342


>gi|300311839|ref|YP_003775931.1| nitrate/sulfonate/bicarbonate ABC
           transporter periplasmic protein [Herbaspirillum
           seropedicae SmR1]
          Length = 341

 Score =  162 bits (409), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 86/219 (39%), Positives = 134/219 (61%), Gaps = 2/219 (0%)

Query: 1   VRGVASLGNFPYYLVSNNPKVKTIADFGDKDRIAVPAVGVSVQSRVLQLASAKLWGDAQY 60
           V G+ +L   P +L +NNP VK++ DF  KD+IA+P +  S+ + +LQ+A+AK +G   Y
Sbjct: 115 VVGLGALSTSPLWLNTNNPNVKSLKDFTPKDKIAIPGIKTSLSAVLLQMAAAKTFGIENY 174

Query: 61  NKLDKVSIAVPHPDATAAIISGGTEITGHFGNPPFQEQELAGNPNAHIVLKSYDVLGGPS 120
            KLD +++++ HP+A A+++SG TEIT HF +PPF  QE A  P    VL S DVLG   
Sbjct: 175 AKLDPLTVSLSHPEAMASLVSGKTEITAHFTSPPFSYQE-AKAPGITRVLNSTDVLGH-I 232

Query: 121 SATVLYATEKFRKDNPKTYGAFLGALDEAAKFISANPEKAADIYLKVNKGNTDRKLLLQI 180
           +  V++A + F   NPK   AF+ A +EA  +I+ N + AA+I+L+V+K    ++ + Q+
Sbjct: 233 TIDVVFALKSFTDKNPKLTQAFMAAQEEANAYIAKNRKGAAEIFLRVSKLKLPQEEVEQM 292

Query: 181 IKNPEVQFKIAPQNTYGLAEFMHRVGAIKNKPASVKDYF 219
           + +P  +F   P +      FM + G IK KPA   + F
Sbjct: 293 LADPGTEFTSTPVDIMQYVVFMSKAGTIKTKPAVWHEMF 331


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.134    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 749,036
Number of extensions: 29916
Number of successful extensions: 70
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 69
Number of HSP's successfully gapped: 2
Length of query: 229
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 147
Effective length of database: 1,231,600
Effective search space: 181045200
Effective search space used: 181045200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 129 (54.3 bits)