BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0300.p
         (112 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309403|ref|YP_003773495.1| nitrate/sulfonate/bicarbonate A...   152   8e-39
gi|300311839|ref|YP_003775931.1| nitrate/sulfonate/bicarbonate A...    81   2e-17

>gi|300309403|ref|YP_003773495.1| nitrate/sulfonate/bicarbonate
          ABC transporter periplasmic protein [Herbaspirillum
          seropedicae SmR1]
          Length = 342

 Score =  152 bits (383), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 87/96 (90%), Positives = 89/96 (92%)

Query: 1  MTTRLSSKGRLRRLFTTTLALSLLGAPLVARAEGQLRIAEQFGIVYLLLNVAQDQQLIEK 60
          MT   S K RLRRL T TLALSLLGAPL+ARAEGQLRIAEQFGIVYLLLNVAQDQQLIEK
Sbjct: 1  MTLFPSFKERLRRLLTATLALSLLGAPLMARAEGQLRIAEQFGIVYLLLNVAQDQQLIEK 60

Query: 61 HGKAAGVDIKVEWLKLSGGSAVNDALLSGSVDIAGA 96
          HGKAAGVDIKVEWLKLSGGSA+NDALLSGSVDIAGA
Sbjct: 61 HGKAAGVDIKVEWLKLSGGSAINDALLSGSVDIAGA 96


>gi|300311839|ref|YP_003775931.1| nitrate/sulfonate/bicarbonate ABC
           transporter periplasmic protein [Herbaspirillum
           seropedicae SmR1]
          Length = 341

 Score = 80.9 bits (198), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 44/103 (42%), Positives = 67/103 (65%), Gaps = 5/103 (4%)

Query: 12  RRLFTTTL---ALSLLGAPLVARAEGQ-LRIAEQFGIVYLLLNVAQDQQLIEKHGKAAGV 67
           RR FT+ +   AL+L G    A AE Q +RI+  +G++YL L V +DQ L+EKH KA G+
Sbjct: 6   RRTFTSLMIASALALSGVSGTAHAEAQEVRISHGYGLLYLPLMVIRDQNLVEKHAKAMGL 65

Query: 68  -DIKVEWLKLSGGSAVNDALLSGSVDIAGAXACAASPRWATSR 109
            ++K +W+ L GG+ +NDA+L+G++DIAG  A      W+ + 
Sbjct: 66  GEVKTKWVLLDGGNVINDAMLAGNLDIAGTGAPGFVTLWSKAH 108


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.131    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 265,813
Number of extensions: 8662
Number of successful extensions: 34
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 2
Length of query: 112
Length of database: 1,619,870
Length adjustment: 73
Effective length of query: 39
Effective length of database: 1,274,215
Effective search space: 49694385
Effective search space used: 49694385
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 124 (52.4 bits)