BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0294.p (167 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311006|ref|YP_003775098.1| transcription regulator protein... 140 5e-35 gi|300313266|ref|YP_003777358.1| AsnC family transcription regul... 132 1e-32 gi|300309515|ref|YP_003773607.1| leucine-responsive regulatory p... 123 7e-30 gi|300311014|ref|YP_003775106.1| leucine-responsive regulatory D... 113 8e-27 gi|300312490|ref|YP_003776582.1| transcription regulator protein... 102 2e-23 >gi|300311006|ref|YP_003775098.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 172 Score = 140 bits (353), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 64/150 (42%), Positives = 102/150 (68%) Query: 13 MDKIDIKILELLQADGQISNVDLAERIHLSPPQCMRRVRALEEQGVIRRYAALVAPAEVG 72 +D+ D+ +L LQ DG I+N L +++HLS Q RRV+ LEE VI RY A++ PA VG Sbjct: 6 VDRYDLALLTELQRDGHITNSALGQKVHLSTSQISRRVQRLEEAHVIERYTAVLDPAVVG 65 Query: 73 LNVTAFVSLSLDRAQFKQVRAVEKVIKAFPEIVECYTISGDFDYLLKVVSQDLKSLSHFL 132 L VTAF +++LDR + EK ++ PE+ EC++++G+ DY+L++V+ DL + S F+ Sbjct: 66 LGVTAFTTVTLDRQGETRGELFEKAVETMPEVTECFSVTGEGDYILRIVAPDLAAFSEFM 125 Query: 133 TDRLMQVPGVAGLRSMICLEEVKPTSPLPI 162 RL+++PGV ++S I L++VK + LP+ Sbjct: 126 MTRLLRLPGVTNVKSNITLKKVKQSHELPL 155 >gi|300313266|ref|YP_003777358.1| AsnC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 159 Score = 132 bits (333), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 62/149 (41%), Positives = 96/149 (64%) Query: 13 MDKIDIKILELLQADGQISNVDLAERIHLSPPQCMRRVRALEEQGVIRRYAALVAPAEVG 72 +D D++IL +LQ + ISN++LA RI+LSP + RV+ LE +G+I RY AL P +G Sbjct: 3 LDTTDLRILNILQENSSISNLELASRINLSPSPTLARVKRLESEGIISRYVALADPHLLG 62 Query: 73 LNVTAFVSLSLDRAQFKQVRAVEKVIKAFPEIVECYTISGDFDYLLKVVSQDLKSLSHFL 132 L V FV + L+R + + E + AF E++E Y ++GD DYLL++V DL +L HF+ Sbjct: 63 LKVNVFVKVILERQGAEALAQFETAVSAFDEVMEVYLMTGDEDYLLRIVVPDLLTLEHFI 122 Query: 133 TDRLMQVPGVAGLRSMICLEEVKPTSPLP 161 D L ++PG+ +RS L+++K + LP Sbjct: 123 VDHLTKIPGIKNIRSSFALKQIKYKTALP 151 >gi|300309515|ref|YP_003773607.1| leucine-responsive regulatory protein [Herbaspirillum seropedicae SmR1] Length = 154 Score = 123 bits (309), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 65/153 (42%), Positives = 94/153 (61%) Query: 10 MNLMDKIDIKILELLQADGQISNVDLAERIHLSPPQCMRRVRALEEQGVIRRYAALVAPA 69 M +DKI KIL LQ DG+ISNVDLA R++LSP C+ RVR L+E G I YAA + P Sbjct: 1 MAGLDKISKKILAELQNDGRISNVDLAARVNLSPAACLERVRKLQEAGYILGYAAQLNPE 60 Query: 70 EVGLNVTAFVSLSLDRAQFKQVRAVEKVIKAFPEIVECYTISGDFDYLLKVVSQDLKSLS 129 + +++ F+ + LDR +K +++ PEI+EC+ ++G FDYL+K +D+ + Sbjct: 61 LLDVSLLVFIEVVLDRTTPDVFAEFKKSVQSIPEIMECHMVAGGFDYLVKSRVKDMNAYR 120 Query: 130 HFLTDRLMQVPGVAGLRSMICLEEVKPTSPLPI 162 FL L+Q+ GV + +EEVK T LPI Sbjct: 121 EFLGKSLLQLKGVRETHTYAVMEEVKNTIRLPI 153 >gi|300311014|ref|YP_003775106.1| leucine-responsive regulatory DNA-binding transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 162 Score = 113 bits (282), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 57/154 (37%), Positives = 89/154 (57%) Query: 9 AMNLMDKIDIKILELLQADGQISNVDLAERIHLSPPQCMRRVRALEEQGVIRRYAALVAP 68 ++ +DK+D +IL +LQ DG+IS +L E++ LS C+ RVR +E GVI Y A V P Sbjct: 7 SVRTLDKLDHRILAVLQKDGRISMKELGEQVGLSVTPCIERVRRMERDGVITGYYARVNP 66 Query: 69 AEVGLNVTAFVSLSLDRAQFKQVRAVEKVIKAFPEIVECYTISGDFDYLLKVVSQDLKSL 128 +G + FV ++L+ + + PE+ EC+ +SGDFDYL+K + + Sbjct: 67 ESLGATLLVFVEITLNHKSGNMFEQFRREVLRIPEVQECHLVSGDFDYLIKARIRGMAEY 126 Query: 129 SHFLTDRLMQVPGVAGLRSMICLEEVKPTSPLPI 162 L D L+Q+PG A +S + +EE+K T LP+ Sbjct: 127 RKLLGDILLQLPGAAQSKSYVVMEEIKETLALPL 160 >gi|300312490|ref|YP_003776582.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 153 Score = 102 bits (253), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 49/150 (32%), Positives = 88/150 (58%) Query: 13 MDKIDIKILELLQADGQISNVDLAERIHLSPPQCMRRVRALEEQGVIRRYAALVAPAEVG 72 +D++D +IL+ LQ DG+I N +LA+++ +S C + L E+G ++ A++ P ++G Sbjct: 3 LDRMDKRILKALQKDGRIGNAELAKKLGMSATACWNHTKRLMEEGYVKEVRAILDPEKLG 62 Query: 73 LNVTAFVSLSLDRAQFKQVRAVEKVIKAFPEIVECYTISGDFDYLLKVVSQDLKSLSHFL 132 L V V + LDR+ + EK ++ + EC ++G+FDY +K+ +DL++ + Sbjct: 63 LPVLVTVGVVLDRSTPESFAEFEKAVRDIAAVQECLLLAGEFDYWIKLRVKDLQAFNRLH 122 Query: 133 TDRLMQVPGVAGLRSMICLEEVKPTSPLPI 162 + L+++PGV LRS L EVK L + Sbjct: 123 ANTLLRLPGVRQLRSFFVLNEVKNNPELVV 152 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.324 0.138 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 468,400 Number of extensions: 16703 Number of successful extensions: 96 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 96 Number of HSP's successfully gapped: 9 Length of query: 167 Length of database: 1,619,870 Length adjustment: 79 Effective length of query: 88 Effective length of database: 1,245,805 Effective search space: 109630840 Effective search space used: 109630840 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 127 (53.5 bits)