BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0293.p
         (347 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309407|ref|YP_003773499.1| ornithine cyclodeaminase [Herba...   550   e-158

>gi|300309407|ref|YP_003773499.1| ornithine cyclodeaminase
           [Herbaspirillum seropedicae SmR1]
          Length = 347

 Score =  550 bits (1416), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 268/347 (77%), Positives = 299/347 (86%)

Query: 1   MVKYIGTSDLQAYLATHPLPEVTGGMVQYLREDFLRWPQFDKSARVASHSARGVIELMPI 60
           MVKYIGT DLQAYLATHPLP+V GGM+ YL  D+LRW +FDK+ARVASHSA+GVIELMPI
Sbjct: 1   MVKYIGTRDLQAYLATHPLPQVIGGMLAYLHHDYLRWREFDKTARVASHSAQGVIELMPI 60

Query: 61  SDGRWYAFKYVNGHPANTAQGLLTVTAFGVLAEVASGYPRLLSELTLTTALRTAATSVLA 120
           SDGR Y FKYVNGHPANTAQGLLTVTAFGVLA+VASGYPRLLSELTLTTALRTAATSVLA
Sbjct: 61  SDGRLYCFKYVNGHPANTAQGLLTVTAFGVLADVASGYPRLLSELTLTTALRTAATSVLA 120

Query: 121 AHHLARPNSRSMALIGNGAQSEFQAIAFHTQLGITELRLFDVDPAATDKLMRNLRDWPAL 180
           A  +AR +SR MA+IGNGAQSEFQ +AFH Q+GI  +RL+D DPAAT +LMRNLR    L
Sbjct: 121 ARQMARSDSRVMAVIGNGAQSEFQILAFHHQMGIEVVRLYDTDPAATARLMRNLRACSGL 180

Query: 181 RLIRARSTAEAVAGADIVTTVTADKRRAVIVHPDMIEAGMHLNAVGGDCPGKTELHRGVL 240
           +LI   S AEAV GADIVTT+TADKRRA I+ P M+EAGMHLNAVGGDCPGKTELH  VL
Sbjct: 181 QLIPCASAAEAVRGADIVTTLTADKRRACIISPAMLEAGMHLNAVGGDCPGKTELHADVL 240

Query: 241 EKARVVVEFAPQSRIEGEVQQMPPDFAVTELWEVLAGKAAGRRDAHEVTVFDSVGFALED 300
           + ARVVVEFAPQSRIEGEVQQMP DF VTELW+VLAG A GR  A EVTVFDSVGFALED
Sbjct: 241 KAARVVVEFAPQSRIEGEVQQMPADFPVTELWQVLAGHAPGRSSAAEVTVFDSVGFALED 300

Query: 301 FSALRYLDDHIDAHHAQQIDLVPVLDNPKDLYGLAIPVLPYKEQANA 347
           F+ALRYLD+ +DA   +Q+DL+P +D+PKDLYGLA+P   +KEQANA
Sbjct: 301 FAALRYLDEQVDARFTRQLDLIPAMDDPKDLYGLAVPATLWKEQANA 347


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.134    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,067,262
Number of extensions: 43562
Number of successful extensions: 122
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 123
Number of HSP's successfully gapped: 2
Length of query: 347
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 261
Effective length of database: 1,212,660
Effective search space: 316504260
Effective search space used: 316504260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)