BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0292.p
         (302 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309408|ref|YP_003773500.1| arginase/agmatinase/formimionog...   556   e-159
gi|300311047|ref|YP_003775139.1| arginase/agmatinase/formimionog...    79   5e-16

>gi|300309408|ref|YP_003773500.1|
           arginase/agmatinase/formimionoglutamate hydrolase
           [Herbaspirillum seropedicae SmR1]
          Length = 302

 Score =  556 bits (1432), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 271/302 (89%), Positives = 287/302 (95%)

Query: 1   MNKIRMMGAPTDVGASRRGASMGPAALRVAELQRSLQQHGLEVIDGGDLGGPANPQQPPV 60
           MN+IRMMGAPTDVGASRRGASM PAALRVAELQR LQQHGL+VIDGGDL GPANPQQPPV
Sbjct: 1   MNRIRMMGAPTDVGASRRGASMAPAALRVAELQRGLQQHGLDVIDGGDLAGPANPQQPPV 60

Query: 61  QGLRHLEQVVQWNQAVFDAVSGSLAEGEVPLLMGGDHALAVGSIAAVARHCRTHGKDLRV 120
           QGLRHLEQVVQWNQ V +AV+  LA+GE+PLLMGGDHALAVGSIAAVA HCR+ GK+LRV
Sbjct: 61  QGLRHLEQVVQWNQTVHEAVAQCLADGELPLLMGGDHALAVGSIAAVAAHCRSQGKELRV 120

Query: 121 LWLDAHADANTSQSTPTGNIHGMPVACLLGVGPEALIRLGGQTPAMQPQQICQIGIRSVD 180
           LWLDAHADANTSQSTPTGNIHGMPVACLLGVGP AL  +GGQTPA+QPQQICQ+GIRSVD
Sbjct: 121 LWLDAHADANTSQSTPTGNIHGMPVACLLGVGPAALTAIGGQTPALQPQQICQVGIRSVD 180

Query: 181 REEKRHLRELGVRVFDMRHIDEYGMRATMQEALAGMGPETHLHVSFDVDFLDAALAPGVG 240
           REEKRHLRELGVRVFDMRHIDEYGMR TM+EALAG+GP+THLHVSFDVDFLDAALAPGVG
Sbjct: 181 REEKRHLRELGVRVFDMRHIDEYGMRQTMEEALAGVGPQTHLHVSFDVDFLDAALAPGVG 240

Query: 241 TAVLGGPTYREAQLCMEMIADTGRLASLDVMELNPACDVRNQTAEVVVDLVESLFGKSTL 300
           TAV GGPTYREAQLCMEMIADTG LASLDVMELNPACDVRNQTAE+VVDLVESLFGKSTL
Sbjct: 241 TAVPGGPTYREAQLCMEMIADTGALASLDVMELNPACDVRNQTAELVVDLVESLFGKSTL 300

Query: 301 MR 302
           +R
Sbjct: 301 IR 302


>gi|300311047|ref|YP_003775139.1|
           arginase/agmatinase/formimionoglutamate hydrolase
           [Herbaspirillum seropedicae SmR1]
          Length = 317

 Score = 79.0 bits (193), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 84/303 (27%), Positives = 131/303 (43%), Gaps = 47/303 (15%)

Query: 6   MMGAPTDVGASRR-GASMGPAALRVAEL--------QRSLQQHGLEVIDGGDLGGPANPQ 56
            +G P D+G S R G   GP  +R   +         R+     L+V D GD+    NP 
Sbjct: 39  FVGVPLDIGTSNRSGTRFGPRQIRTESVLLRPYNMATRAAPFDSLKVADLGDVA--LNPY 96

Query: 57  QPPVQGLRHLEQVVQWNQAVFDAVSGSLAEGEVPLLMGGDHALAVGSIAAVARHCRTHGK 116
                    L   V+  +  +D +    A G   + +GGDH L +  + A+AR+    G 
Sbjct: 97  S--------LLDSVRMIEEAYDRI---YATGCKTISLGGDHTLTLPILRALARYRGPVG- 144

Query: 117 DLRVLWLDAHADANTSQSTPTGNIHGMPVACLLGVGPEALIRLGGQTPAMQPQQICQIGI 176
              ++ +DAHAD N + +      HG P             R   +   + PQ++ QIG+
Sbjct: 145 ---LIHVDAHADVNDTMNGEK-IAHGTP------------FRRAFEEGLLDPQRVVQIGL 188

Query: 177 RSVDR--EEKRHLRELGVRVFDMRHIDEYGMRATMQEALAGMGPETHLHVSFDVDFLDAA 234
           R      ++    R  G RV          +   M+E  A MG +  ++++FD+D LD A
Sbjct: 189 RGTGYHADDFDWCRAQGFRVVQAEECWHRSLAPLMEEVRAQMG-DGPVYLTFDIDGLDPA 247

Query: 235 LAPGVGTAVLGGPTYREAQLCMEMIADTGRL--ASLDVMELNPACDVRNQTAEVVVDLVE 292
            APG GT  +GG T ++    +E+I     L   S DV+E++P  D    TA V  +L  
Sbjct: 248 FAPGTGTPEIGGLTVQQG---LEIIRGCKGLDIVSADVVEVSPPYDQAGTTALVAANLAY 304

Query: 293 SLF 295
            + 
Sbjct: 305 EML 307


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.135    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,078,348
Number of extensions: 49932
Number of successful extensions: 153
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 152
Number of HSP's successfully gapped: 2
Length of query: 302
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 217
Effective length of database: 1,217,395
Effective search space: 264174715
Effective search space used: 264174715
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)