BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0288.p
         (231 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309413|ref|YP_003773505.1| methyl transferase [Herbaspiril...   389   e-110

>gi|300309413|ref|YP_003773505.1| methyl transferase [Herbaspirillum
           seropedicae SmR1]
          Length = 232

 Score =  389 bits (1000), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 187/223 (83%), Positives = 204/223 (91%), Gaps = 2/223 (0%)

Query: 1   VNSSPISSAQTGVHEQLATLVARHADPAHPFRKPVTDYNQRAFDASMAAWRAAGEPPLIL 60
           VNSSPISSAQTGVHEQLA+LVARHA  AHPFRKPV DYN RAF+ASM AWR AG+ PLIL
Sbjct: 8   VNSSPISSAQTGVHEQLASLVARHA--AHPFRKPVADYNLRAFEASMDAWRVAGQAPLIL 65

Query: 61  DTGCGVGLSTLHLAARYPDHFVIGIDQSADRLARNTHWDGPEPANLCFVRADLVDYWRLA 120
           DTGCGVGLSTLHLA+++PDHFVIGIDQSADRLAR+THWDGPEPANLCFVRADLVDYWRLA
Sbjct: 66  DTGCGVGLSTLHLASQHPDHFVIGIDQSADRLARHTHWDGPEPANLCFVRADLVDYWRLA 125

Query: 121 HETGLRPARHYLLYPNPWPKIGHLARRWQGHPVFPFIVALGGQLECRSNWQIYVEEFTSA 180
            + G+RPARHYLLYPNPWPKIGHLARRWQGH VFP IVALGGQ+ECRSNW+IYVEEF +A
Sbjct: 126 LQAGVRPARHYLLYPNPWPKIGHLARRWQGHAVFPAIVALGGQIECRSNWRIYVEEFAAA 185

Query: 181 LNQLSGGTFRTEAWQPDQPITPFERKYLASGHTLWRVVADLDA 223
           L+QLSG   + EAW+P++PITPFERKYLASGH LWR  ADLDA
Sbjct: 186 LSQLSGQRIQAEAWRPERPITPFERKYLASGHALWRCQADLDA 228


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.136    0.450 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 868,026
Number of extensions: 38822
Number of successful extensions: 108
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 109
Number of HSP's successfully gapped: 1
Length of query: 231
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 149
Effective length of database: 1,231,600
Effective search space: 183508400
Effective search space used: 183508400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)