BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0281.p
         (178 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309418|ref|YP_003773510.1| RNA methyltransferase [Herbaspi...   331   2e-92
gi|300310511|ref|YP_003774603.1| tRNA and rRNA cytosine-C5-methy...    64   5e-12

>gi|300309418|ref|YP_003773510.1| RNA methyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 424

 Score =  331 bits (848), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 163/178 (91%), Positives = 169/178 (94%)

Query: 1   MRVLDACAAPGGKTGHLLELADIELQALDHDPRRLQRIAENLDRLQLKAQLITGDAREDG 60
           MRVLDACAAPGGKTGHLLELAD++LQALDHD RRLQRIAENLDRLQLKA+L TGDAR D 
Sbjct: 247 MRVLDACAAPGGKTGHLLELADLDLQALDHDTRRLQRIAENLDRLQLKARLTTGDARADD 306

Query: 61  WWDGQGFDRILADVPCTASGIVRRHPDIRWLRRKTDTAQLATLSAQILDKLWQMLRPDGK 120
           WWDGQ FDRILADVPCTASGIVRRHPDIRWLRRKTDTAQLATLS QILDKLWQMLRPDGK
Sbjct: 307 WWDGQPFDRILADVPCTASGIVRRHPDIRWLRRKTDTAQLATLSTQILDKLWQMLRPDGK 366

Query: 121 LLLVTCSLWPQESEQQAIAFAQKNHAIRLPAPGQLLPTAGADADHDGLFYALFQKPGA 178
           LLLVTCSLWPQESEQQA+AFAQK++AIRLPAPGQLLPTA   ADHDGLFYALFQKPGA
Sbjct: 367 LLLVTCSLWPQESEQQAVAFAQKHNAIRLPAPGQLLPTASETADHDGLFYALFQKPGA 424


>gi|300310511|ref|YP_003774603.1| tRNA and rRNA
           cytosine-C5-methylase [Herbaspirillum seropedicae SmR1]
          Length = 419

 Score = 64.3 bits (155), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 76/160 (47%), Gaps = 7/160 (4%)

Query: 3   VLDACAAPGGKT---GHLLELADIELQALDHDPRRLQRIAENLDRLQLKAQLITGDARED 59
           V+D CA  GGKT   G L+      L A D   +RL ++   L R  L        A E+
Sbjct: 226 VVDFCAGAGGKTLALGALMRNTG-RLYAFDVSEKRLAKLKPRLARSGLSNVHPVVIAHEN 284

Query: 60  GWWDGQ---GFDRILADVPCTASGIVRRHPDIRWLRRKTDTAQLATLSAQILDKLWQMLR 116
                +     DR+L D PC+  G +RR+PD++W +     A++    + IL    +++R
Sbjct: 285 DAKVKRLAGKLDRVLVDAPCSGLGTLRRNPDMKWRQTVETLAEMRAKQSSILASAARLVR 344

Query: 117 PDGKLLLVTCSLWPQESEQQAIAFAQKNHAIRLPAPGQLL 156
             G+L+  TCS   +E+++    F Q +    L   G++L
Sbjct: 345 AGGRLVYGTCSFLEEENDEVIADFLQSHPDFILRPMGEVL 384


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.138    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 639,847
Number of extensions: 25945
Number of successful extensions: 78
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 2
Length of query: 178
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 99
Effective length of database: 1,245,805
Effective search space: 123334695
Effective search space used: 123334695
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 127 (53.5 bits)