BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0275.p
         (648 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309421|ref|YP_003773513.1| transmembrane protein [Herbaspi...   939   0.0  

>gi|300309421|ref|YP_003773513.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 668

 Score =  939 bits (2427), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 568/685 (82%), Positives = 600/685 (87%), Gaps = 54/685 (7%)

Query: 1   MKQDNQTGLPELTLRGMLLGALITVVFTASNVYLGLKVGLTFSSAIPAAVISMAVLRLFS 60
           M+ DNQ GLPELTLRGMLLGALITVVFTASNVYLGLKVGLTFSSAIPAAVISMAVLRLF+
Sbjct: 1   MQNDNQAGLPELTLRGMLLGALITVVFTASNVYLGLKVGLTFSSAIPAAVISMAVLRLFA 60

Query: 61  NANILENNMVQTPP-------------------------------------GMLGVMFSI 83
           NANILENNMVQT                                       GMLGVMFSI
Sbjct: 61  NANILENNMVQTQASAAGTLSSVIFILPGLLMMGHWQGFPFLQTLGICAAGGMLGVMFSI 120

Query: 84  PLRRVMVVQSALPYPEGVAAAEILRVGSADAEGGEETRRGLRDILFGGTIAAAFSVIASG 143
           PLRRVMVVQ  LPYPEGVAAAEILRVGSADA+GGEE+RRGLRDILFGG +AA FSV ASG
Sbjct: 121 PLRRVMVVQGELPYPEGVAAAEILRVGSADADGGEESRRGLRDILFGGALAAGFSVAASG 180

Query: 144 LKLFAESISLWFTAGASVVRLTMGFSLALVGAGYMIGIVSGIAILIGLVIAWGVAVPYLT 203
           LK+FAES+SLWF AGAS VRLTMGFSLALVGAGYMIGIVSGIAILIGLV+AWGVAVPYLT
Sbjct: 181 LKVFAESMSLWFAAGASAVRLTMGFSLALVGAGYMIGIVSGIAILIGLVLAWGVAVPYLT 240

Query: 204 AVTPHAADVALSDFANGLWKSQVRFIGAGMIGVAAVWTLATLFKPMLEGVKASLSTLSRR 263
           AVTPHAADV+L+DFANGLWKSQVRFIGAGMIGVAA+WTLATLF PM++GVKASLSTL+RR
Sbjct: 241 AVTPHAADVSLADFANGLWKSQVRFIGAGMIGVAAIWTLATLFGPMVQGVKASLSTLARR 300

Query: 264 QQGSAERTDQDMSPRWIIVISLAMIALLAVVFASFLSDAPVSPALFIGLIVYAVVFAFVF 323
           QQGS ERTDQDMSPRWI++ISLAMI LLAVVFASFL+ APVSPALF GL+VYAVVFAFVF
Sbjct: 301 QQGSTERTDQDMSPRWIVIISLAMIGLLAVVFASFLAGAPVSPALFAGLVVYAVVFAFVF 360

Query: 324 GFLVAAACGYMAGLIGSSSSPISGIGIVAVILVSVLLLVSGAVDPLLATPEGSKLAIAVA 383
           GFLVAAACGYMAGLIGSSSSPISGIGIVAVILVS+LLL SG VD LLATPEG KLAIA+A
Sbjct: 361 GFLVAAACGYMAGLIGSSSSPISGIGIVAVILVSLLLLASGMVDTLLATPEGGKLAIAIA 420

Query: 384 LFVTAAIIAVAAIANDNLQDLKTGQLVGATPWRQQGTGQLVGGGGGGGGGGGVLLLVGCV 443
           LFVTAAIIAVAAIANDNLQDLKTGQLVGATPWRQQ                 V LLVGCV
Sbjct: 421 LFVTAAIIAVAAIANDNLQDLKTGQLVGATPWRQQ-----------------VALLVGCV 463

Query: 444 VGALIIPPVLNLLYNAYGFTGALPRAGMDAAQALAAPQATLMTAIATGIFTRELNWTMLG 503
           VGAL+IPPVL LLYNAYGFTGALPRAGMDAAQALAAPQATLMTAIATGIFTRELNWTML 
Sbjct: 464 VGALVIPPVLTLLYNAYGFTGALPRAGMDAAQALAAPQATLMTAIATGIFTRELNWTMLT 523

Query: 504 VGVALGIVLIVIDWLLARRGGVARLPVLAVGIGIYLPPMVSSALFLGALLGWLIERALRR 563
           VGV LGI+LIVIDWLLARRGGVARLPVLAVGIGIYLPP+VSSALF+GALLGW IERALRR
Sbjct: 524 VGVGLGILLIVIDWLLARRGGVARLPVLAVGIGIYLPPVVSSALFVGALLGWFIERALRR 583

Query: 564 RALAAGADPEAYADKPRQRGILVASGLIVGESLVGVLLAAVIGFTGKDAPLAVVSGAFES 623
           RALAAGA+ EAYADKPRQRGILVASGLIVGESLVGV+LA VIGFTGKDAPLA+VSG+FES
Sbjct: 584 RALAAGANVEAYADKPRQRGILVASGLIVGESLVGVVLAGVIGFTGKDAPLALVSGSFES 643

Query: 624 TGQWLGLVALVLVLIAFARRILPSR 648
            GQWLGL A  L+L+AFARRI+P+R
Sbjct: 644 IGQWLGLAAFALILLAFARRIMPAR 668


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.140    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,649,944
Number of extensions: 65638
Number of successful extensions: 431
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 430
Number of HSP's successfully gapped: 2
Length of query: 648
Length of database: 1,619,870
Length adjustment: 91
Effective length of query: 557
Effective length of database: 1,188,985
Effective search space: 662264645
Effective search space used: 662264645
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 134 (56.2 bits)