BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0267.p
         (209 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312440|ref|YP_003776532.1| threonine efflux protein [Herba...   108   3e-25
gi|300311201|ref|YP_003775293.1| threonine efflux protein [Herba...    57   1e-09

>gi|300312440|ref|YP_003776532.1| threonine efflux protein
           [Herbaspirillum seropedicae SmR1]
          Length = 208

 Score =  108 bits (270), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 68/197 (34%), Positives = 103/197 (52%), Gaps = 15/197 (7%)

Query: 17  MVLTPGPNMLYLVSRSVCQGRKAGLISLAGIALGLVFYMLCTALGISALLMTLPLAYDAL 76
           + L PGP+ LY+++R + QGRKAGL++ AG   GLVF+ L   LG +AL+   P AY AL
Sbjct: 14  LTLAPGPDNLYVLTRGIAQGRKAGLVAAAGFCSGLVFHTLLAVLGFAALIKAYPPAYHAL 73

Query: 77  RLAGALYLLYLAWQALK---------PGGRSTFALRTLPPDRPRKLFSMGLLTSLLNPKI 127
           + AGA YL YL  + L+           G+   A+        R+++   +L ++LNPK+
Sbjct: 74  QYAGAAYLAYLGVRTLRSASAGLALAADGQGAAAVPL------RRIYWQSVLANMLNPKV 127

Query: 128 AVMYLSLLPQFIQPEHGSVLLQSFALGLTQIVVGVSMNAVITLSAASISALLAGRPHWQR 187
            + +++ LPQF+Q E G   LQ   L L  IV   ++ + I L + ++ A    R     
Sbjct: 128 TLFFIAFLPQFVQREAGHEALQMLVLALVFIVQAFAIFSAIALFSGAVGAYFRRRASASV 187

Query: 188 LQRWLMGSVLAGLAVHM 204
               L G    GL + M
Sbjct: 188 HLNRLAGCAFIGLGIRM 204


>gi|300311201|ref|YP_003775293.1| threonine efflux protein
           [Herbaspirillum seropedicae SmR1]
          Length = 219

 Score = 57.0 bits (136), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 80/161 (49%), Gaps = 12/161 (7%)

Query: 10  FAALCLGMVLTPGPNMLYLVSRSVCQGRKAGLISLAGIALGLVFYMLCTALGISALLMTL 69
           FAA C+ + ++PG   +  +S  +  G +    ++ G+ + LV  ++    G+ +LL+  
Sbjct: 10  FAAACV-IAISPGSGAVLSMSHGLNYGVRRTSATILGLEIALVVILIIAGAGVGSLLVAS 68

Query: 70  PLAYDALRLAGALYLLYLA---WQALKPGGRSTFALRTLPPDRP---RKLFSM----GLL 119
             A++ +++AGALYL+YL    W+A  P      AL           R+ +      G L
Sbjct: 69  ETAFNVIKVAGALYLIYLGFSQWRARVPSEEQGEALDAANASARAHARQTWWQRCMTGFL 128

Query: 120 TSLLNPKIAVMYLSLLPQFIQPEHGSVLLQSFALGLTQIVV 160
           T+  NPK  V  +++LPQFI  +   + LQ   L +T + V
Sbjct: 129 TNATNPKGIVFMVAVLPQFIDHDR-PLWLQLLVLAVTMVAV 168


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.140    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 497,784
Number of extensions: 14417
Number of successful extensions: 87
Number of sequences better than 1.0e-08: 5
Number of HSP's gapped: 87
Number of HSP's successfully gapped: 5
Length of query: 209
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 128
Effective length of database: 1,236,335
Effective search space: 158250880
Effective search space used: 158250880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 128 (53.9 bits)